| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,702,962 – 4,703,075 |
| Length | 113 |
| Max. P | 0.987037 |
| Location | 4,702,962 – 4,703,075 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.19 |
| Mean single sequence MFE | -18.43 |
| Consensus MFE | -12.15 |
| Energy contribution | -13.93 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.66 |
| SVM decision value | 2.06 |
| SVM RNA-class probability | 0.987037 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4702962 113 + 22224390 AACAAAAAAGCGCACACGCACACACAAAAUAACGCAGCAGAUUGUUGUCACACAUUUUGUGCGCACGCAAAACUAAUUGAAUUAUAUUUAAUUAAUGUCACAC-AACAA--UGCAU---- .........(((....))).................(((..(((((((...((((((((((....))))))).(((((((((...))))))))).)))...))-)))))--)))..---- ( -21.10) >DroPse_CAF1 15759 99 + 1 AAGCAAAAAG----------CA-----------GCGUCAGAUUGUUGUCACGAGCAUUACAGACACAAACAACUAAUUGAAUUAUCUUUAAUUAAUGUGGGAAAAACAAGGUGAAUAAAU ..((.....(----------((-----------(((......)))))).....))........(((.......((((((((.....)))))))).(((.......)))..)))....... ( -12.80) >DroSec_CAF1 55936 103 + 1 AAACAAAAAGAACACACACACA----------UGCAGCAGAUUGUUGUCACAUAUUUUGUGCGCACGCAAAACUAAUUGAAUUAUAUUUAAUUAAUGUCGCAC-AACAA--UGCAU---- ......................----------....(((..((((((((((((.(((((((....))))))).(((((((((...))))))))))))).).))-)))))--)))..---- ( -19.40) >DroEre_CAF1 57348 114 + 1 AAUAAAAAACCCCACACACACAGACAAAAUAACGCAGCAGAUUGUUGUCACACAUUUUGUGCGCACGCAAAACUAAUUGAAUUAUAUUUAAUUAAUGUGGCAC-AACAA--UGCACA--- ....................................(((..(((((((..(((((((((((....))))))).(((((((((...))))))))).))))..))-)))))--)))...--- ( -22.30) >DroYak_CAF1 54154 97 + 1 ------AAAGUACACACACACA-----------GCAGCAGAUUGUUGUCACACAUUUUGUGCGCACGCAAAACUAAUUGAAUUAUAUUUAAUUAAUGUGACAC-AACAA--UGCACA--- ------................-----------...(((..((((.((((((..(((((((....))))))).(((((((((...))))))))).))))))))-))...--)))...--- ( -22.20) >DroPer_CAF1 15128 99 + 1 AAGCAAAAAG----------CA-----------GCGUCAGAUUGUUGUCACGAGCAUUACAGACACAAACAACUAAUUGAAUUAUCUUUAAUUAAUGUGGGAAAAACAAGGUGAAUAAAU ..((.....(----------((-----------(((......)))))).....))........(((.......((((((((.....)))))))).(((.......)))..)))....... ( -12.80) >consensus AAGCAAAAAG__CACACACACA___________GCAGCAGAUUGUUGUCACACAUUUUGUGCGCACGCAAAACUAAUUGAAUUAUAUUUAAUUAAUGUGGCAC_AACAA__UGCAUA___ ....................................(((..(((((((((((..(((((((....))))))).((((((((.....)))))))).)))))))...))))..)))...... (-12.15 = -13.93 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:29 2006