Locus 1678

Sequence ID X_DroMel_CAF1
Location 4,700,272 – 4,700,381
Length 109
Max. P 0.682451
window2760

overview

Window 0

Location 4,700,272 – 4,700,381
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 70.80
Mean single sequence MFE -24.02
Consensus MFE -6.10
Energy contribution -8.14
Covariance contribution 2.04
Combinations/Pair 1.25
Mean z-score -1.78
Structure conservation index 0.25
SVM decision value 0.31
SVM RNA-class probability 0.682451
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4700272 109 - 22224390
ACGAGUGCGGUAAUAAAUCUAUUUAUUUAUAUAGGCCAAUUUACCUGGCCUCG------CGGCCCGAAUUCGC-CCCAACUUUUCGUGCCCCAUCAUCCAUCCAGUUUGUCUGACU----
..((..(((...((((((......))))))..((((((.......))))))))------)(((.((((.....-........)))).)))...)).......(((.....)))...---- ( -22.52)
>DroPse_CAF1 13525 101 - 1
GCGAGUGGGGCAAUAAAUCUAUUUAUUUAUACCUGACA-UCUGCCCCACCGCGGAACCACUCCCCGC--CCGCUCCGAACAUUUCGGC--------UC----UCGUCUAUCUGUCU----
(((.((((((((((((((......))))))........-..)))))))).((((.........))))--.))).((((.....)))).--------..----..............---- ( -27.10)
>DroEre_CAF1 54769 105 - 1
ACCAGUGCGGCAAUAAAUCUAUUUAUUUAUAUAGGCCAAUUUACCUGGCCUCG------CACCCCGUAUUGGC-CCCAACUUUUCCUGCCCCAUCAUC----CAGUCUGUCUGUCU----
.(((((((((..((((((......))))))..((((((.......))))))..------....))))))))).-........................----(((.....)))...---- ( -23.60)
>DroYak_CAF1 51583 109 - 1
ACGAGUGCGGCAAUAAAUCUAUUUAUUUAUAUAGGCCAAUUUACCUGGCCUCA------CGCCCCGAUUUUGC-CCUAACUUUUCCUGCCCCAUCAUU----CAGUUUGUCUGUCUGUCU
..((((..(((((..(((((((......))).((((((.......))))))..------......))))))))-)...))))............((..----(((.....)))..))... ( -19.50)
>DroPer_CAF1 12931 101 - 1
GCGAGUGGGGCAAUAAAUCUAUUUGUUUAUACCUGACA-UCUGCCCCACCGCGGAACCACUCCCCGC--CCGCUCCGAACAUUUCGGC--------UC----UCGUCUAUCUGUCU----
(((.((((((((((((((......))))))........-..)))))))).((((.........))))--.))).((((.....)))).--------..----..............---- ( -27.40)
>consensus
ACGAGUGCGGCAAUAAAUCUAUUUAUUUAUAUAGGCCAAUUUACCUGGCCUCG______CGCCCCGA_UUCGC_CCCAACUUUUCGUGCCCCAUCAUC____CAGUCUGUCUGUCU____
.((((.((((..((((((......))))))..((((((.......))))))............)))).))))................................................ ( -6.10 =  -8.14 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:28 2006