| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,696,572 – 4,696,668 |
| Length | 96 |
| Max. P | 0.727759 |
| Location | 4,696,572 – 4,696,668 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.38 |
| Mean single sequence MFE | -15.57 |
| Consensus MFE | -8.44 |
| Energy contribution | -8.78 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.727759 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4696572 96 - 22224390 -CUUUCUCUAAGCUGCUAACUAAUCAAAAAGAAAUCAGAAAUAU----------AAACUGAUUUCGCAUUGAAUCACAUUUCUU---------U----UUUUGUUUUGGUUCUUCCAAAA -................((((((.((((((((((((((......----------...)))))))).....(((......)))..---------)----)))))..))))))......... ( -15.20) >DroPse_CAF1 10049 96 - 1 GCCCUGUGAAACGCUCCAACUAAUCAAAAAGAAAUCAAAAAAAUCAGAAAAUGAAAACUGAUUUCAUAUUGAAUCACAUU------------------UUAUGUUUUGGG------GGAA ..(((.(((((((..........((((...(((((((......(((.....)))....)))))))...))))........------------------...))))))).)------)).. ( -16.00) >DroSec_CAF1 49860 105 - 1 -CUUUCUCUAAGCUGCUAACUAAUCAAAAAGAAAUCAGAAAUAU----------AAACUGAUUUCGCAUUGAAUCACAUUUCUUUUCUUUUUUU----UUUUGUUUUGGUUCUUCCAAAA -................((((((.((((((((((..(((((...----------....((((((......)))))).......))))).)))))----)))))..))))))......... ( -16.24) >DroEre_CAF1 50382 104 - 1 -CUUUCGCUAAGCUGCUAACUAAUCAAAAAGAAAUCAGAAAUAU----------AAACUGAUUUCGCAUUGAAUCACAUUUCUUUU-UAUUUUU----UUUUGUUUUGGUUCUCCCAAAA -.....((......)).((((((.((((((((((((((......----------...)))))))).....(((......)))....-......)----)))))..))))))......... ( -16.70) >DroYak_CAF1 47446 109 - 1 -CUUUCUCUAAGCUGCUAACUAAUCAAAAAGAAAUCAGAAAUAU----------AAACUGAUUUCGCAUUGAAUCACAUUCCUUUUAUAUUUUUCGUGUUCUGUUUUGAUUCUCCCAAAA -....................((((((((.((((((((......----------...)))))))).....(((.(((..................))))))..))))))))......... ( -14.97) >DroPer_CAF1 9287 96 - 1 GCUCUGUGAAACGCUCCAACUAAUCAAAAAGAAAUCAAAAAAAUCAGAAAAUGAAAACUGAUUUCAUAUUGAAUCACAUU------------------UUAUGUUUUGGG------GGAA .............((((((....((((...(((((((......(((.....)))....)))))))...))))...((((.------------------..)))).)))))------)... ( -14.30) >consensus _CUUUCUCUAAGCUGCUAACUAAUCAAAAAGAAAUCAGAAAUAU__________AAACUGAUUUCGCAUUGAAUCACAUUUCUU_________U____UUUUGUUUUGGUUCU_CCAAAA .......................((((...((((((((...................))))))))...))))................................................ ( -8.44 = -8.78 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:25 2006