Locus 1674

Sequence ID X_DroMel_CAF1
Location 4,694,612 – 4,694,704
Length 92
Max. P 0.882858
window2755

overview

Window 5

Location 4,694,612 – 4,694,704
Length 92
Sequences 4
Columns 92
Reading direction reverse
Mean pairwise identity 91.26
Mean single sequence MFE -20.54
Consensus MFE -16.40
Energy contribution -17.15
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.20
Structure conservation index 0.80
SVM decision value 0.92
SVM RNA-class probability 0.882858
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4694612 92 - 22224390
GUUAGUGCUUCUCCACUUUUACAGCGUUCUUCCUCGCUUUUGCGUUGACAUUUAAUGUAAUAAUUUUUACGAUGAUGCUCGACGGCAUUAAA
.(((((((..............((((........))))....((((((((((...(((((......)))))..)))).))))))))))))). ( -23.10)
>DroSec_CAF1 47991 92 - 1
GUUAGUGCUCCUCCACUUUUACAGCGUUCUUCCUCACUUUUGCGUUGACAUUUAAUGUAAUAAUUUUUACGAUGAUGCUCGACGGCAUUAAA
.((((((((..............(((..............)))(((((((((...(((((......)))))..)))).))))))))))))). ( -19.24)
>DroEre_CAF1 48502 83 - 1
GUUAGUGAACCUCCACUUUC---------UUCCUCGCUUUUGCGUUGACAUUUAAUGUAAUAAUUUUUACGAUGAUGCUCGACGGCAUUAAA
.((((((..((.........---------......((....))(((((((((...(((((......)))))..)))).))))))))))))). ( -16.70)
>DroYak_CAF1 45464 89 - 1
GUUAGUGCUCCUCAACUUUUACAGCG---UUCCUCGCUUUUGCGUUGACAUUUAAUGUAAUAAUUUUUACGAUGAUGCUCGACGGCAUUAAA
.(((((((..............((((---.....))))....((((((((((...(((((......)))))..)))).))))))))))))). ( -23.10)
>consensus
GUUAGUGCUCCUCCACUUUUACAGCG___UUCCUCGCUUUUGCGUUGACAUUUAAUGUAAUAAUUUUUACGAUGAUGCUCGACGGCAUUAAA
.((((((((..........................((....))(((((((((...(((((......)))))..)))).))))))))))))). (-16.40 = -17.15 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:24 2006