| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,688,860 – 4,688,956 |
| Length | 96 |
| Max. P | 0.818517 |
| Location | 4,688,860 – 4,688,956 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 82.83 |
| Mean single sequence MFE | -20.75 |
| Consensus MFE | -14.68 |
| Energy contribution | -15.55 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.818517 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4688860 96 + 22224390 CUGAAAAAAAAAGAAAAAAAAGUU-GGGCACAAAA--AAAGCCAACACACAGAGAGACAUUUGCAAGUUGAUUUAUAAGCGCGCUGAUGUCAGUUACGU .....................(((-((........--....))))).........((((((.((..(((........)))..)).))))))........ ( -16.70) >DroSim_CAF1 14418 92 + 1 CUUAAAAAAAG------AAAGUGU-GGGCACAAAAAUAAAGCCAACACACAGAGAGACAUUUGCAAGUUGAUUUAUAAGCGCGCUGAUGUCAGUUACGU ...........------...((((-((((...........)))..))))).....((((((.((..(((........)))..)).))))))........ ( -20.90) >DroEre_CAF1 42745 89 + 1 CUUGGAAAAA-------AAAGUGUUGGGGG-GUAA--AAACCCAACACGCAGAGAGACAUUUGCAAGUUGAUUUAUAAGCGCGCUGAUGUCAGUUACGU ..........-------...((((((((..-....--...)))))))).......((((((.((..(((........)))..)).))))))........ ( -25.60) >DroYak_CAF1 39560 86 + 1 UUUUUGGCAA-------AAAGUGU---GGG-AUAA--AAAGCCAACACACAGAGAGACAUUUGCAAGUUGAUUUAUAAGCGCGCUGAUGUCAGUUACGU ....((((..-------...((((---(((-....--....))..))))).....((((((.((..(((........)))..)).)))))).))))... ( -19.80) >consensus CUUAAAAAAA_______AAAGUGU_GGGCA_AAAA__AAAGCCAACACACAGAGAGACAUUUGCAAGUUGAUUUAUAAGCGCGCUGAUGUCAGUUACGU ....................((((..(((...........)))...)))).....((((((.((..(((........)))..)).))))))........ (-14.68 = -15.55 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:18 2006