Locus 1666

Sequence ID X_DroMel_CAF1
Location 4,685,899 – 4,686,019
Length 120
Max. P 0.515044
window2741

overview

Window 1

Location 4,685,899 – 4,686,019
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.17
Mean single sequence MFE -41.00
Consensus MFE -32.38
Energy contribution -33.38
Covariance contribution 1.00
Combinations/Pair 1.09
Mean z-score -1.65
Structure conservation index 0.79
SVM decision value -0.04
SVM RNA-class probability 0.515044
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4685899 120 + 22224390
UACGAUGGCCAUAAGCGAUUUUGGGUAGCCGAAAGAGAAAAAUCAACAGCUGGCGAAGAGCGAGCCAAGGUCGUUCGCCCGGCGGUCGCUCUUUAGUGCGGGGAAAAACCGUUGGGGAAA
..((((((((.....(..((((((....))))))..)...........(((.((.....)).)))...))))).)))(((((((((..((((.......))))....))))))))).... ( -39.60)
>DroSec_CAF1 39511 119 + 1
UACGAUGGCCAUAAGCGAUUUUGGGUAGCCGAAAGAGAAAAAUCAACAGCUGGCGAAGAGCGAGCCAAGGUCGUUCGCCGGGCGGCCGCUCUUUAGUGCGGGGAA-AACCGUUGGGGAAA
..((((((((....(((.....(((..((((...((......)).....((((((((((.(.......).)).)))))))).))))..))).....)))..))..-..))))))...... ( -39.60)
>DroEre_CAF1 39899 119 + 1
UACGAUGGCCAUAAGCGAUUUUCGGCAGCCGAAAGAGAAAAAUCAACAGCUGGCGAAGAGCGAGCCAAGGUCGUUCGCCGGGCGGCUGCUCUUUAGUGCGGGGAA-AAUCGUUGGGGAAA
........((...((((((((((((((((((...((......)).....((((((((((.(.......).)).)))))))).))))))))(((......))))))-)))))))..))... ( -44.50)
>DroYak_CAF1 36748 115 + 1
UACGUUGGCCACAAGCGAUGUUGGGUGGCCGAAAGAGAGAAAUCAACAGCUGGCGAAGAGCGAGCCAAGGUCGUUCGCCGGUC----GCUCUUUAGUGCGGGGAA-AACCGUUGGGGAAA
....((((((((.(((...)))..))))))))..........((..((((..(((((((((((.((..(((.....)))))))----)))))))...))((....-..))))))..)).. ( -40.30)
>consensus
UACGAUGGCCAUAAGCGAUUUUGGGUAGCCGAAAGAGAAAAAUCAACAGCUGGCGAAGAGCGAGCCAAGGUCGUUCGCCGGGCGGCCGCUCUUUAGUGCGGGGAA_AACCGUUGGGGAAA
..((((((((....(((.....((((.((((...((......)).....((((((((((.(.......).)).)))))))).)))).)))).....)))..)).....))))))...... (-32.38 = -33.38 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:12 2006