Locus 1659

Sequence ID X_DroMel_CAF1
Location 4,673,103 – 4,673,221
Length 118
Max. P 0.991511
window2730

overview

Window 0

Location 4,673,103 – 4,673,221
Length 118
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 98.31
Mean single sequence MFE -42.67
Consensus MFE -42.09
Energy contribution -41.87
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -3.43
Structure conservation index 0.99
SVM decision value 2.27
SVM RNA-class probability 0.991511
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4673103 118 + 22224390
CCGUCUCCAUACGUGUGCGUGCUCCAAAAUCGAGAAACAUCCCUUGGGUGGGGCAACAAGGACAACGAUGAGGACACAUAAAGGCUAAAUUGAGCUUGAAUGUGCGCCAUGGAAGACA
..((((((((.(((((.(.(((((((...(((((........))))).)))))))....).)).)))....((.(((((..(((((......)))))..)))))..)))))).)))). ( -43.20)
>DroSec_CAF1 34135 118 + 1
CCGUCUUCAUACGUGUGCGUGCUCCAAAAUCGAGAAACAUCCCUUGGGUGGGGCAACAUGGACAACGAUGAGGACACAUAAAGGCUAAAUUGAGCUUGAAUGUGCGCCAUGGAAGACA
..((((((...(((((.(((((((((...(((((........))))).)))))))...)).)).)))....((.(((((..(((((......)))))..)))))..))...)))))). ( -41.60)
>DroEre_CAF1 34531 118 + 1
UCGUCUCCAUACGUGUGCGUGCUCCAAAAUCGAGAAACAUCCCUUGGGUGGGGCAACAAGGACAACGAUGAGGACACAUAAAGGCUAAAUUGAGCUUGAAUGUGCGCCAUGGAAGACA
..((((((((.(((((.(.(((((((...(((((........))))).)))))))....).)).)))....((.(((((..(((((......)))))..)))))..)))))).)))). ( -43.20)
>consensus
CCGUCUCCAUACGUGUGCGUGCUCCAAAAUCGAGAAACAUCCCUUGGGUGGGGCAACAAGGACAACGAUGAGGACACAUAAAGGCUAAAUUGAGCUUGAAUGUGCGCCAUGGAAGACA
..((((((((.(((((.(.(((((((...(((((........))))).)))))))....).)).)))....((.(((((..(((((......)))))..)))))..)))))).)))). (-42.09 = -41.87 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:02 2006