Locus 1656

Sequence ID X_DroMel_CAF1
Location 4,671,491 – 4,671,605
Length 114
Max. P 0.541990
window2724

overview

Window 4

Location 4,671,491 – 4,671,605
Length 114
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.18
Mean single sequence MFE -44.90
Consensus MFE -32.61
Energy contribution -34.05
Covariance contribution 1.44
Combinations/Pair 1.17
Mean z-score -1.44
Structure conservation index 0.73
SVM decision value 0.02
SVM RNA-class probability 0.541990
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4671491 114 - 22224390
GUCCUGCAGACCAUCACCAAAAUGGGCAGGUGAUAGGUUAACAUUUGGUGGCAUGGCGGCAGGUCCAACUGCGGUGCCGUAAGGUCACCUUG------GGACACGGAGCUCCAAUUCAGC
(((((...((((((((((..........)))))).)))).......((((((...((((((...((......))))))))...))))))..)------))))..((....))........ ( -42.70)
>DroSec_CAF1 32475 120 - 1
GUCCUGCAGACCAUCACCAAAAUGGGCAGGUGAUUGGUCAAUCCUUGAUGGCAGGGCGGCAGGUCCAACUGCGGUGCCGUAAGGUCGCUCCGAGUAAGGCACUCGGAGCUCCAGUUCAGC
(((((((.((((((((((..........))))).))))).(((...))).))))))).((((......))))((.(((....))).(((((((((.....))))))))).))........ ( -54.60)
>DroEre_CAF1 32948 114 - 1
GUCCUGCAGACCAUCACCAAAACGGGCAGGUGAAAGGUCAAUCCUUGGUGGCAGGGCGGCAGGUCCAACUGCGGUGCCAUUAGGUCGAUUCG------GGAAUCGGUGCUCCAAUUCAGC
.(((((..((((.(((((..........)))))..))))(((((((((((((...((.((((......)))).)))))))))))..))))))------)))...((....))........ ( -39.10)
>DroYak_CAF1 29743 114 - 1
GUCCUGCAGACCAUCACCAACACGGGCAGGUGAUAGCUCAAUCCUUGGUGGCAGGGCGGCAGGUCCAACUGCGGUUCCAUAAGGUCGAUGCG------GGAAUCGGAGCUCCAGUUCAGC
.(((((((((((.(((((((...((((........)))).....)))))))..((((.((((......)))).)))).....))))..))))------)))....((((....))))... ( -43.20)
>consensus
GUCCUGCAGACCAUCACCAAAACGGGCAGGUGAUAGGUCAAUCCUUGGUGGCAGGGCGGCAGGUCCAACUGCGGUGCCAUAAGGUCGAUUCG______GGAAUCGGAGCUCCAAUUCAGC
(((((((.((((((((((..........)))))).)))).((.....)).))))))).((((......))))((((((....)).))))..........((((.((....)).))))... (-32.61 = -34.05 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:57 2006