Locus 1654

Sequence ID X_DroMel_CAF1
Location 4,668,484 – 4,668,600
Length 116
Max. P 0.620032
window2721

overview

Window 1

Location 4,668,484 – 4,668,600
Length 116
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.05
Mean single sequence MFE -26.25
Consensus MFE -21.36
Energy contribution -21.92
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.80
Structure conservation index 0.81
SVM decision value 0.18
SVM RNA-class probability 0.620032
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4668484 116 + 22224390
UGCGGGAACAACAAUAAACUUGUGUAGCUGCGUCGGUAAGUGGGAAUUAUAUAAACAUAU----ACAUCAGUGAGCAAGCACUCACACGAACACCGCAGUACACACACACAUACACAUGC
.(((....)...........((((((.(((((((((((.(((.............))).)----))....(((((......))))).)))....))))))))))).............)) ( -26.22)
>DroSec_CAF1 29765 116 + 1
UGCGGGAACAACAAUAAACUUGUGUAGCUGCGUCGGUAAGUGGGAAUUAUAUAAACAUAU----ACAUCAGUGAGCUAGCACUCAUACAACCACCGCACUACACACACACAUACACAUGC
.(((....)...........(((((((.((((..(((......((..(((((....))))----)..)).(((((......)))))...)))..))))))))))).............)) ( -24.90)
>DroEre_CAF1 30538 114 + 1
UGCGGGAACAACAAUAAACUUGUGUAGCUGCGUCGGUAAGUGGGAAUUAUAUAAACAUAU----ACAUCAGUGAGCAAACACUCACACAACCACCGCAGUACACA--CACAUACACAUGC
.(((....)...........((((((.(((((..(((......((..(((((....))))----)..)).(((((......)))))...)))..)))))))))))--...........)) ( -27.10)
>DroYak_CAF1 27057 118 + 1
UGCGGGAACAACAAUAAACUUGUGUAGCUGCGUCGGUAAGUGGGAAUUAUAUAAACAUAUAUGUACAUCAGCGAGCAAACACUCACACAACCACCGCAGUACACA--CACAUACACAUGC
.(((....)...........((((((.(((((..(((..(((.((..((((((......))))))..))...(((......))).))).)))..)))))))))))--...........)) ( -26.80)
>consensus
UGCGGGAACAACAAUAAACUUGUGUAGCUGCGUCGGUAAGUGGGAAUUAUAUAAACAUAU____ACAUCAGUGAGCAAACACUCACACAACCACCGCAGUACACA__CACAUACACAUGC
.(((....)...........((((((.(((((..(((..(((.............)))............(((((......)))))...)))..))))))))))).............)) (-21.36 = -21.92 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:54 2006