Locus 1652

Sequence ID X_DroMel_CAF1
Location 4,667,765 – 4,667,871
Length 106
Max. P 0.806217
window2719

overview

Window 9

Location 4,667,765 – 4,667,871
Length 106
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 79.97
Mean single sequence MFE -37.38
Consensus MFE -23.16
Energy contribution -23.73
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -2.02
Structure conservation index 0.62
SVM decision value 0.63
SVM RNA-class probability 0.806217
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4667765 106 - 22224390
CACAAAGCACCACAAAGACAUGCACCAGCAGCCGAAAUGGGCGGUG--------------GGCGUGGUGGUGUUUGCAUAAAUAAAAUGGCAUAAUAAUACCGCGAGUGUGUGGACCUUU
...((((..(((((....(((((.(((.(.(((......)))).))--------------))))))(((((((((((............)))....)))))))).....)))))..)))) ( -35.00)
>DroSec_CAF1 29066 96 - 1
CAC----------AAAGACAUGCACCAGCAGCCGAAAUGGGCGGUG--------------GGCGUGGCGGUGUUUGCAUGAAUAAAAUGGCAUAAUAAUACCGCGAGUGUGUGGACCUUA
(((----------(....(((((.(((.(.(((......)))).))--------------))))))(((((((((((((.......)).)))....)))))))).....))))....... ( -33.20)
>DroEre_CAF1 29811 119 - 1
CGCAAAGCACCACAAAGACAUGCACCAGCAUUCGAAAUGGGCGGUGGGCGGUGGGC-GUGGUCGUGGUGCUGUUUGCAUGAAUAAAAGAGCAUAAUAAUACCGCGAGUGUGUGGACCGCA
(((...((.(((....((.((((....))))))....))))).))).(((((..((-..(.((((((((.(((((((............))).)))).)))))))).)..))..))))). ( -42.40)
>DroYak_CAF1 26327 120 - 1
CACAAAACACCACAAAGACAUGCACUAGCAGCCGAAAUGGGCGAUGGGCGGUGGUCGGUGGGCGUGGUGCUGUUUGCAUGUAUAAAGGGGCAUAAUAAUACCGCGAGUGUGUGGACCGCU
((((..((.((((...(((.(((.(((...(((......)))..))))))...))).)))).(((((((.(((((((.(......)...))).)))).))))))).)).))))....... ( -38.90)
>consensus
CACAAAGCACCACAAAGACAUGCACCAGCAGCCGAAAUGGGCGGUG______________GGCGUGGUGCUGUUUGCAUGAAUAAAAGGGCAUAAUAAUACCGCGAGUGUGUGGACCGCA
..................(((((((..((.(((......))).)).................(((((((.(((((((............))).)))).))))))).)))))))....... (-23.16 = -23.73 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:52 2006