Locus 1646

Sequence ID X_DroMel_CAF1
Location 4,663,856 – 4,663,957
Length 101
Max. P 0.526306
window2705

overview

Window 5

Location 4,663,856 – 4,663,957
Length 101
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 79.94
Mean single sequence MFE -23.78
Consensus MFE -16.90
Energy contribution -19.40
Covariance contribution 2.50
Combinations/Pair 1.09
Mean z-score -1.52
Structure conservation index 0.71
SVM decision value -0.01
SVM RNA-class probability 0.526306
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4663856 101 + 22224390
AGCUGGUAAAUGUAAUUCACACUCUUUGAUUGAGUAAAAAUAAUGCAGAUUUCAUUUUGCAUUAUUUUGCUAUUAAAUUCGACGAGUGUUGGCGCUAAGAU-------------------
.((..(....((.....))(((((.((((...(((((((.(((((((((......)))))))))))))))).......)))).))))))..))........------------------- ( -26.70)
>DroSec_CAF1 25178 101 + 1
AGCUGGUAAAUGUAAUUCACACUCUUUGAUUGAGCAAAAAUAAUGCAGGUUUCAUUUUGCAUUAUUUUGCCAUUAAAUUCGACGAGUGUUGGCGCCAAGAU-------------------
...((((....((.....((((((.((((.((.((((((.(((((((((......)))))))))))))))))......)))).))))))..))))))....------------------- ( -27.80)
>DroEre_CAF1 25966 120 + 1
AGCUGGUAAAUGUAAUUCACACUCUUUGAUUGAGUAAAAAUAAUGCAGGUUUCAUUUUUCAUUAUUUUGCUAUUAAAUUCGACGAGUGCUGGUGCCAAACUAAAAUGCUCUUUAUGAGUU
((((.(((((.(((.....(((((.((((...(((((((.(((((.(((......))).)))))))))))).......)))).))))).((((.....))))...)))..))))).)))) ( -24.40)
>DroYak_CAF1 22337 106 + 1
AGCUGGUAAAUGUAAUCCACACUCUUUGAUUGAGCAAAAAUAAUGCAGGUUUCAU----------UUUGCCAUUAAAUUCGACGAGUUUUGGCGCCAAACUAAAAUGCUCUUUU----UU
...(((((((((....((....((.......))(((.......))).))...)))----------)).((((..((((((...)))))))))))))).................----.. ( -16.20)
>consensus
AGCUGGUAAAUGUAAUUCACACUCUUUGAUUGAGCAAAAAUAAUGCAGGUUUCAUUUUGCAUUAUUUUGCCAUUAAAUUCGACGAGUGUUGGCGCCAAAAU___________________
...((((.........((((((((.((((((((...(((((((((((((......)))))))))))))....))))..)))).))))).))).))))....................... (-16.90 = -19.40 +   2.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:39 2006