| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,662,354 – 4,662,467 |
| Length | 113 |
| Max. P | 0.776598 |
| Location | 4,662,354 – 4,662,467 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.33 |
| Mean single sequence MFE | -34.68 |
| Consensus MFE | -27.10 |
| Energy contribution | -27.38 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.776598 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4662354 113 - 22224390 GCUGGCCGGAAAUGCAAAGUGCAAGGCGGAAGUCGCUCAUAUCACGCCGCAUUGAAGCAAAAAUCGAGCG--GAAAAAUGAAAACAAAACUCAGUUUCCGCUGCGAGCA-----UCCGCU ...(((.(((..(((..(((((..((((((.((.....)).)).)))))))))...)))....(((((((--((((..(((.........))).)))))))).)))...-----)))))) ( -34.40) >DroSec_CAF1 23698 118 - 1 GCUGGCCGGAAAUGCAAAGUGCAAGGCGGAAGUCGCUCAUAUCACGCCGCAUUGAAGCAAAAAUCGAGCG--GAAAAAUGAAAACAAAACUCAGUUUCCGCUGCGAGCAUCCCAUCCGCU ((.((..(((..(((..(((((..((((((.((.....)).)).)))))))))...)))....(((((((--((((..(((.........))).)))))))).)))...)))...)))). ( -34.80) >DroSim_CAF1 12625 118 - 1 GCUGGCCGGAAAUGCAAAGUGCAAGGCGGAAGUCGCUCAUAUCACGCCGCAUUGAAGCAAAAAUCGAGCG--GAAAAAUGAAAACAAAACUCAGUUUCCGCUGCGGGCAUUCCAUCCGCU ((.((..((((.(((...(((...(((....)))...)))......(((((((((........))))(((--((((..(((.........))).)))))))))))))))))))..)))). ( -37.00) >DroEre_CAF1 24499 113 - 1 GCUGGCCGGAAAUGCAAAGUGCAAGGCGGAAGUCGCUCAUAUCACGCCGCAUUGAAGCAAAAAUCGAGCG--GAAAAAUGAAAACAAAACUCAGCUUCCGCUGCGAGCAUC-----CGCU ...(((.(((..(((..(((((..((((((.((.....)).)).)))))))))...)))....(((((((--(((...(((.........)))..))))))).)))...))-----)))) ( -34.10) >DroYak_CAF1 20807 118 - 1 GCUGGCCGGAAAUGCAAAGUGCAAGGCGGAAGUCGCUCAUAUCACGCCGCAUUGAAGCAAAAAUCGAGCGGGGAAAAAUGAAAACAAAACUCAACUUCCGCUGCGAUCAUCC--UCCGCA ((.((..(((..(((.....))).(((((((((...........(.((((.((((........)))))))).).....(((.........)))))))))))).......)))--.)))). ( -33.10) >consensus GCUGGCCGGAAAUGCAAAGUGCAAGGCGGAAGUCGCUCAUAUCACGCCGCAUUGAAGCAAAAAUCGAGCG__GAAAAAUGAAAACAAAACUCAGUUUCCGCUGCGAGCAUCC__UCCGCU (((.(((((((((((..(((((..((((((.((.....)).)).)))))))))...)).......(((.....................))).)))))))..)).)))............ (-27.10 = -27.38 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:30 2006