Locus 1641

Sequence ID X_DroMel_CAF1
Location 4,660,738 – 4,660,858
Length 120
Max. P 0.850680
window2693

overview

Window 3

Location 4,660,738 – 4,660,858
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.25
Mean single sequence MFE -32.16
Consensus MFE -24.28
Energy contribution -24.16
Covariance contribution -0.12
Combinations/Pair 1.09
Mean z-score -2.12
Structure conservation index 0.76
SVM decision value 0.79
SVM RNA-class probability 0.850680
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4660738 120 + 22224390
ACAUUAAUUGCUCGCUAGAUGGCGCUGUCAGUGUUCAAUAUGGCGGCCUAAAAACCAAAAUGGCCGUCGUGCAAACCAAUUAAGCGAAAAAGAGAGCAAGAAAGAGAUAUCAGGGUACAA
.......(((((((((....)))(((......(((...((((((((((.............))))))))))..)))......)))........))))))..................... ( -31.22)
>DroSec_CAF1 22116 120 + 1
ACAUUAAUUGCUCGCUAGAUGGCGCUGUCAGUGUUCAAUAUGGCGGCCUAAAAACCAAAAUGGCCGUCGUGCAAAGCAAUUAAGCGAAAAAGAGAGGAAGAAAGAGAUAUCAGCGUGUAA
.......((((.((((.((((.((((.....((((...((((((((((.............))))))))))...))))....)))).....................)))))))).)))) ( -33.37)
>DroSim_CAF1 11062 120 + 1
ACAUUAAUUGCUCGCUAGAUGGCGCUGUCAGUGUUCAAUAUGGCGGCCUAAAAACCAAAAUGGCCGUCGUGCAAACCAAUUAAGCGAAAAAGAGAGGAAGAAAGAGCUAUCAGCGUGUAA
.......((((.((((.((((((.((.((..(.(((...(((((((((.............)))))))))((...........))........))).).)).)).)))))))))).)))) ( -36.72)
>DroEre_CAF1 22962 120 + 1
ACAUUAAUUGCUCGCUAGAUGGCGCUGUCAGUGUUCAAUAUGGCGGCCUAAAAACCAAAAUGGCCGUCGUGCACACCAAUUAAGCGAAAAAGAGAGGAAGCAAGAGAAAGCGAGUUAAAA
.........(((((((......((((....((((....((((((((((.............)))))))))).))))......)))).........(....).......)))))))..... ( -33.12)
>DroYak_CAF1 18757 120 + 1
ACAUUAAUUGCUCGCUAGAUGGCGCUGUCAGUGUUCAAUAUGGUGGCCUAAAAACCAAAACGGUCGGCGUGCAAAUCAAUUAAGCGAAAAAAAGGGAAAGCAAGGGACAUUGGGGUGAAA
.......(..((((((....))).....((((((((..((((.(((((.............))))).))))............((..............))...)))))))))))..).. ( -26.36)
>consensus
ACAUUAAUUGCUCGCUAGAUGGCGCUGUCAGUGUUCAAUAUGGCGGCCUAAAAACCAAAAUGGCCGUCGUGCAAACCAAUUAAGCGAAAAAGAGAGGAAGAAAGAGAUAUCAGGGUGAAA
...........(((((.((((((((.....)))))...((((((((((.............)))))))))).......))).)))))................................. (-24.28 = -24.16 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:29 2006