Locus 164

Sequence ID X_DroMel_CAF1
Location 613,955 – 614,047
Length 92
Max. P 0.862595
window261

overview

Window 1

Location 613,955 – 614,047
Length 92
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 74.88
Mean single sequence MFE -29.15
Consensus MFE -13.77
Energy contribution -15.65
Covariance contribution 1.88
Combinations/Pair 1.05
Mean z-score -2.42
Structure conservation index 0.47
SVM decision value 0.83
SVM RNA-class probability 0.862595
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 613955 92 + 22224390
AACUUGGGUCUAGCU----------GCAGGCAGCCUAAUUAAUACUUAAUUUCGGUUGUUUUAGCUGCUAAGCUAGACCAACUCCACAGCC------U---AUCUAAUCUG
......(((((((((----------((((((((((.(((((.....)))))..)))))).....))))..)))))))))............------.---.......... ( -27.80)
>DroSec_CAF1 78975 92 + 1
AACGUGGGGCUAGCU----------GCAGGGAGACUAGUUACAACUUCAUUUCGGUUGUUUUAGCUGCUAAGCUAGACCAGCUCCACAACC------U---AUCUAAUUUG
...((((((((((((----------...((.((.((((..((((((.......)))))).)))))).)).)))).....))))))))....------.---.......... ( -28.10)
>DroSim_CAF1 78614 92 + 1
AACGUGGGGCUAGCU----------GCAGGGAGCCUAGUUACAACUUCAUUUCGGUGGUUUUAGCUGCUAAGCUAGACCAGCUCCACAACC------U---AUCUAAUCUG
...((((((((.(((----------(...((((...........))))....))))(((((.((((....)))))))))))))))))....------.---.......... ( -28.90)
>DroYak_CAF1 82628 106 + 1
AAUUUGGGGCUGGCUAUCAGCUAGUG-AUGGAGCCUAGUUAGCACUCCACUUCUGUUAUUUUAGCUGCUGAAGUAGACCAGCUCCACCGCCACCAGAUUAGAUA----CUU
....((((((((((((((((((((((-((((((...(((....)))....)))))))))..)))))).....)))).)))))))))..................----... ( -31.80)
>consensus
AACGUGGGGCUAGCU__________GCAGGGAGCCUAGUUACAACUUCAUUUCGGUUGUUUUAGCUGCUAAGCUAGACCAGCUCCACAACC______U___AUCUAAUCUG
...((((((((..................((((...........))))...........(((((((....)))))))..))))))))........................ (-13.77 = -15.65 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:42 2006