| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,656,768 – 4,656,858 |
| Length | 90 |
| Max. P | 0.829854 |
| Location | 4,656,768 – 4,656,858 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 66.13 |
| Mean single sequence MFE | -17.60 |
| Consensus MFE | -10.09 |
| Energy contribution | -11.09 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.829854 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4656768 90 - 22224390 ACGUGCCCAGCAGAAGUAUGCGGAAGAAUUGCGGAAAAAAUUCAGAAAUAGAAG-CAGAGU---------------------AAAGCUCUGGGGAUCGAUUUAAAAUAGAAG .((..(((.(((......)))....(((((........)))))...........-(((((.---------------------....))))))))..)).............. ( -19.30) >DroSec_CAF1 18343 77 - 1 ACGUGCCCAGCAGAAGGAUGCGGAA-------------AAGUCCCAAAUAGAAG-CAGAGU---------------------AAAGCUCUGGGGAUCGAUUUGUAAUAUAAG .((..(((.(((......)))(((.-------------...)))..........-(((((.---------------------....))))))))..)).............. ( -17.80) >DroEre_CAF1 19078 107 - 1 ACGUGCCCAGAAGAAGGAUGCGAAA--U-UGCAAAAA-AAGU-AGAAAUAGAAAAAAGUGUACAUAUUAAAGCUAACAUGUUAAAGCUCUGGGGUUCGAUUUAUAAAAUAGG .((..((((((.......((((...--.-))))....-....-..............((..((((.(((....))).))))....))))))))...)).............. ( -15.70) >consensus ACGUGCCCAGCAGAAGGAUGCGGAA____UGC__AAA_AAGUCAGAAAUAGAAG_CAGAGU_____________________AAAGCUCUGGGGAUCGAUUUAUAAUAUAAG .((..(((.(((......)))..................................((((((........................)))))))))..)).............. (-10.09 = -11.09 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:24 2006