Locus 1637

Sequence ID X_DroMel_CAF1
Location 4,655,255 – 4,655,362
Length 107
Max. P 0.507390
window2687

overview

Window 7

Location 4,655,255 – 4,655,362
Length 107
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.90
Mean single sequence MFE -37.90
Consensus MFE -28.33
Energy contribution -29.89
Covariance contribution 1.56
Combinations/Pair 1.03
Mean z-score -1.38
Structure conservation index 0.75
SVM decision value -0.05
SVM RNA-class probability 0.507390
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4655255 107 + 22224390
AGACCUGGCCAGGAUUU--UGGGGCCCGACU----AGCGAUUUCCGGCAUUUGCGGAGCCUCAUUUCUGGUUUAUUAUAAUUCAACACGAAUGUGUGUG----CGUGUGUGUUGGG---G
...(((((((((((...--(((((((((...----.((........)).....))).)))))).))))))))..........(((((((.((((....)----))).)))))))))---) ( -38.50)
>DroSec_CAF1 16913 108 + 1
AGACCUGGCCAGGAUUU--UGGGGCCCGACU----AGCGAUUUCCGGCAUUUGCGGAGCCUCAUUUCUGGUUUAUUAUAAUUCAACACGAAUGUGUGUG----CGUGUGUGUUGGGG--G
...(((((((((((...--(((((((((...----.((........)).....))).)))))).))))))))..........(((((((.((((....)----))).))))))))))--. ( -39.80)
>DroEre_CAF1 17538 112 + 1
ACACCCGGCCAGGAUUU--CGGGGCCCGACU----AGCGAUUUCCGGCAUUUGUGGAGCCUCAUUUCUGGUUUAUUAUAAUUCAACACGAAUGUGUGCGUGUGCGAGUGUGUUGGGGG--
...(((((((((((...--.((((((((...----.((........)).....))).)))))..))))))))..........(((((((..((..(....)..))..)))))))))).-- ( -37.90)
>DroYak_CAF1 13137 120 + 1
AAACCUGGCCAGGAUUUUUGGGGGCCCGACUAGCUAGCGAUUUCCGGCAUUUGCGGAGCCUCAUUUCUGGUUUAUUAUAAUUCAACACGAAUGUGUAUGUGUGCGUUGUUGUUGGUGGGG
...(((((((((((......((((((((....((..(......)..)).....))).)))))..)))))))).........((((((..((((..(....)..))))..)))))).))). ( -35.40)
>consensus
AGACCUGGCCAGGAUUU__UGGGGCCCGACU____AGCGAUUUCCGGCAUUUGCGGAGCCUCAUUUCUGGUUUAUUAUAAUUCAACACGAAUGUGUGUG____CGUGUGUGUUGGGG__G
......((((((((.....(((((((((........((........)).....))).)))))).)))))))).........((((((((.((((........)))).))))))))..... (-28.33 = -29.89 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:23 2006