Locus 1634

Sequence ID X_DroMel_CAF1
Location 4,653,819 – 4,653,912
Length 93
Max. P 0.525945
window2677

overview

Window 7

Location 4,653,819 – 4,653,912
Length 93
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 72.56
Mean single sequence MFE -22.13
Consensus MFE -5.42
Energy contribution -6.02
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.24
SVM decision value -0.01
SVM RNA-class probability 0.525945
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4653819 93 - 22224390
UCAACAGCCAGCCA---GCUGGCAUAAUGAAA---------GAGCUGC-----------G----AAAAACCAGCGACAGCUUGUUGACAAUGUAAAUAAUGUGACAAAGGGGGCGGUGAA
(((((.(((((...---.))))).........---------(((((((-----------(----.........)).)))))))))))............(((..(....)..)))..... ( -23.50)
>DroSim_CAF1 4176 89 - 1
UCAACAGCCAGCCC---GCUGGC-UAAUGAAA---------GAGCUGC----------------AAAAACCAGCGACAGCUUGUUGACA-UGUAAAU-AUGUGACAAANNNNNNNNNNNN
(((((((((((...---.)))))-).......---------(((((((----------------..........).)))))))))))((-(((....-)))))................. ( -22.20)
>DroEre_CAF1 16097 88 - 1
UCAACAGCCAGCUG-------GCAUAAUGGAG---------GAGCUGC-----------G----AAAAACCAGCGACAGCUUGUUGACAAUGUAAAUAAUGUGACAA-AGGGGCGGUGAA
(((...(((..((.-------((((..(.((.---------(((((((-----------(----.........)).)))))).)).)..))))..............-)).)))..))). ( -20.06)
>DroYak_CAF1 11678 92 - 1
UCAACAGCCAGCUG---GCG-GCAUAAUGAAA---------GAGCCGC-----------G----AAAAACCAGCGACAGCUUGUUGACAAUGUAAAUAAUGUGACAAAAGGGGCGGCGAA
......(((.(((.---(((-((.........---------..)))))-----------.----.....((.((....))(((((.(((.((....)).))))))))..))))))))... ( -24.00)
>DroAna_CAF1 20178 119 - 1
AAAAAAGUAAGCGAAAAACA-GCAUAAUGAAAAUGAAGAACGAACUGCGGCAGUGUUGCGAGAAAAAACCGAGCGACAGCUUGUUGACAAUGUAAAUAAUGUGACAACGGGGCGGAUGAG
..........((........-)).....................((((.....((((((..(.......)..)))))).(((((((...((((.....))))..)))))))))))..... ( -20.90)
>consensus
UCAACAGCCAGCCA___GCU_GCAUAAUGAAA_________GAGCUGC___________G____AAAAACCAGCGACAGCUUGUUGACAAUGUAAAUAAUGUGACAAAAGGGGCGGUGAA
((((((....((.........))................................................(((....)))))))))................................. ( -5.42 =  -6.02 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:15 2006