| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,641,086 – 4,641,196 |
| Length | 110 |
| Max. P | 0.500000 |
| Location | 4,641,086 – 4,641,196 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 86.87 |
| Mean single sequence MFE | -29.85 |
| Consensus MFE | -24.82 |
| Energy contribution | -26.93 |
| Covariance contribution | 2.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.83 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4641086 110 + 22224390 UGAGCAGCAGGCAAAAGCUGAAAGCCGAAAGUGAAUUGCUUCCGCAUUUUCGUUCGCUUUAAGCGCUGCUCAAGUGCCGACCAUGCCCCCAA-AAACCACCCGUCCCCCCA-- ((((((((.(((....)))....((..((((((((((((....))).....)))))))))..))))))))))....................-..................-- ( -30.40) >DroSim_CAF1 8363 109 + 1 UGAGCAGCAGGCAAAAGCUGAAAGCCGAAAGUGAAUUGCUUCCGCAUUUUCGUUCGCUUUAAGCGCUGCUCAAGUGGCGACCAUGCCCCCAA-AAACCACCCGUCCC-CAA-- ((((((((.(((....)))....((..((((((((((((....))).....)))))))))..))))))))))..(((.(((...........-.........))).)-)).-- ( -34.05) >DroYak_CAF1 26294 102 + 1 UGAGCAGCAGGCAAACGCUGAAAGCCGAAAGUGAAUUGCUUCCGCA----------CUUUAAGCGUCGCUCAAGUGGCGACCAUGCCUCCAAAAAACCAACCGUCUC-CAACA ......(.(((((...(((.((((.((.((((.....)))).))..----------)))).)))((((((.....))))))..))))).).................-..... ( -25.10) >consensus UGAGCAGCAGGCAAAAGCUGAAAGCCGAAAGUGAAUUGCUUCCGCAUUUUCGUUCGCUUUAAGCGCUGCUCAAGUGGCGACCAUGCCCCCAA_AAACCACCCGUCCC_CAA__ ((((((((.(((....)))....((..((((((((((((....))).....)))))))))..))))))))))...(((......))).......................... (-24.82 = -26.93 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:10 2006