| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,636,789 – 4,636,896 |
| Length | 107 |
| Max. P | 0.828391 |
| Location | 4,636,789 – 4,636,896 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 70.67 |
| Mean single sequence MFE | -26.73 |
| Consensus MFE | -18.03 |
| Energy contribution | -21.00 |
| Covariance contribution | 2.97 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.828391 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4636789 107 - 22224390 UUGUUGGUGAGCAUCCCGUUCAACAAAUUCCACCCACC---G------CCCAUCGCCCAUCGCCCGACCUUGUCAUGUAGUUAGAUAUAUUUAAAGUUGGGCGUUGGGAAAGUAAA ...(((.(((((.....))))).)))............---.------.......((((.((((((((.(((..(((((......))))).))).)))))))).))))........ ( -30.30) >DroSec_CAF1 22922 110 - 1 UUGUUGGUGAGCAUCCCGUCCAACAAAUUCCACCCCCCGCCG------CCCAUCGACCAUCGCCCGACCUUGUCAUGUAGUUAGAUAUAUUUAAAGUUGGGCGUUGGGAAAGUAAA (((((((((.......)).)))))))................------........(((.((((((((.(((..(((((......))))).))).)))))))).)))......... ( -29.10) >DroSim_CAF1 4535 116 - 1 UUGUUGGUGAGCAUCCCGUCCAACAAAUUCUACCCCCCGCCGCCAACGCCCAUCGCCCAUCGCCCGACCUUGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN ..(((((((.((..........................)))))))))..................................................................... ( -10.97) >DroEre_CAF1 20993 107 - 1 UUGUUGGUGAGCAUCUCACCCGGCAAACACCACCCACC---A------CCCACCGCCCAUCGCCCGACCUUGUCAUGUAGUUAGAUAUAUUUAAAGUUGGGCGUUGGGAAAGUAGA (((((((((((...)))).)))))))............---.------...((..((((.((((((((.(((..(((((......))))).))).)))))))).))))...))... ( -34.90) >DroYak_CAF1 22320 102 - 1 UUGUUGCUGAGCAGCCCACCCAACAAAAAC-----AUC---A------CACACCACCCAUCGCCCGACCUUGUCAUGUAGUUAGAUAUAUUUAAAGUUGGGCGUUGGGAAAGUAAA ..(((((...)))))...............-----...---.------.......((((.((((((((.(((..(((((......))))).))).)))))))).))))........ ( -28.40) >consensus UUGUUGGUGAGCAUCCCGUCCAACAAAUUCCACCCACC___G______CCCAUCGCCCAUCGCCCGACCUUGUCAUGUAGUUAGAUAUAUUUAAAGUUGGGCGUUGGGAAAGUAAA (((((((((.......)).))))))).............................((((.((((((((.(((..(((((......))))).))).)))))))).))))........ (-18.03 = -21.00 + 2.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:01 2006