Locus 1622

Sequence ID X_DroMel_CAF1
Location 4,632,755 – 4,632,874
Length 119
Max. P 0.773464
window2660

overview

Window 0

Location 4,632,755 – 4,632,874
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.98
Mean single sequence MFE -33.48
Consensus MFE -29.48
Energy contribution -29.28
Covariance contribution -0.20
Combinations/Pair 1.05
Mean z-score -1.39
Structure conservation index 0.88
SVM decision value 0.54
SVM RNA-class probability 0.773464
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4632755 119 + 22224390
GUAAUCGGUUUUUGGCAUUUGCUUUGCUGAACGCCAUUAUUUUU-GGUGCAACAAUGCGCUAAUUAGGCGUCGAUUCCCAAAUACCGUCGCUAAUUCCAUGCCCCUCAGCAUAUUGGUAG
.....((((.(((((((.......)))(((.((((.......((-((((((....))))))))...))))))).....)))).))))..((((((...((((......)))))))))).. ( -31.30)
>DroSec_CAF1 19047 119 + 1
GUAAUCGGUUUUGGGCAUUUGCUUUGCUGAACGCCAUUAUUUUU-GGUGCAACAAUGCGCUAAUUAGGCGUCGAUUCGCAAAUACCGUCGCUAAUUCCAUGCCCCUUGGCAUAUUGGUAG
.....((((((((((((.......))))((.((((.......((-((((((....))))))))...))))))......)))).))))..((((((...(((((....))))))))))).. ( -34.10)
>DroSim_CAF1 538 119 + 1
GUAAUCGGUUUUUGGCAUUUGCUUUGCUGAACGCCAUUAUUUUC-GGUGCAACAAUGCGCUAAUUAGGCGUCGAUUCCCAAAUACCGUCGCUAAUUCCAUGCCCCUUGGCAUAUUGGUAG
.....((((.(((((((.......)))(((.((((...(((...-((((((....)))))))))..))))))).....)))).))))..((((((...(((((....))))))))))).. ( -32.30)
>DroEre_CAF1 17087 119 + 1
GUAAUCGGUUUUUGGCAUUUGCUUUGCUGGACGCCAUUAUUUUC-GGUGCAACAAUGCGCUAAUUAGGCGUCGAUUCCCAAAUACCGUCGCUAAUUCCAUGCCCCCCAGCAUAUUGGCAG
.....((((.(((((((.......)))..((((((...(((...-((((((....)))))))))..))))))......)))).))))..((((((...((((......)))))))))).. ( -35.50)
>DroYak_CAF1 18152 120 + 1
GUAAUCGGUUUUUGGCAUUUGCUGUGCUGGACGCCAUUAUUUUCUGGUGCAACAAUGCGCUAAUUAGGCGUCGAUUCCCAAAUACCGUCGCUAAUUCCAUGCCCCUCAGCAUAUUGGUAG
.....((((.((((((((.....))))..((((((...((....(((((((....)))))))))..))))))......)))).))))..((((((...((((......)))))))))).. ( -34.20)
>consensus
GUAAUCGGUUUUUGGCAUUUGCUUUGCUGAACGCCAUUAUUUUC_GGUGCAACAAUGCGCUAAUUAGGCGUCGAUUCCCAAAUACCGUCGCUAAUUCCAUGCCCCUCAGCAUAUUGGUAG
.....((((.(((((((.......)))(((.((((...(((....((((((....)))))))))..))))))).....)))).))))..((((((...((((......)))))))))).. (-29.48 = -29.28 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:59 2006