Locus 1618

Sequence ID X_DroMel_CAF1
Location 4,630,036 – 4,630,156
Length 120
Max. P 0.500000
window2648

overview

Window 8

Location 4,630,036 – 4,630,156
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.33
Mean single sequence MFE -43.18
Consensus MFE -32.42
Energy contribution -32.53
Covariance contribution 0.11
Combinations/Pair 1.27
Mean z-score -1.43
Structure conservation index 0.75
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4630036 120 + 22224390
CAUAGUAUCUAUGCCAUUGAGUGGACUUCUGGCUCACUACGGUUUCGAUGGCGGCUGGCCAUCGAUCUUCUAUAUCUUCGGGCUGUUCAGCACCAUCUGGUGUAUCAUCUUUAUUUGCCU
(((((...)))))....(((.(((((....(((((((....)).((((((((.....))))))))..............))))))))))(((((....))))).)))............. ( -33.10)
>DroPse_CAF1 47220 120 + 1
GAUCAUCUCGAUGCCGCUGAGCGGCCUGCUGGCCGAGUACGGCUUCGACGGCGGCUGGCCCUCGAUCUUCUACGUGUUCGGAAUACUGAGCACCGUCUGGUGCGUGCUCUAUCUCUAUCU
((((...((((.((((.((..(((((....)))))..)))))).)))).(((.....)))...))))...(((((((((((....))))))(((....)))))))).............. ( -44.00)
>DroSec_CAF1 16460 120 + 1
CAUAGUAUCGAUGCCAUUGAGUGGCCUACUGGCCCACUACGGUUUCGAUGGCGGCUGGCCAUCGAUCUUCUACGUCUUCGGCCUGGUCAGCACCAUCUGGUGUGUAAUCUUCAUCUGCCU
......(((((.(((....(((((((....)).)))))..))).)))))(((((((((((...(((.......)))...)))).)))).(((((....))))).............))). ( -42.70)
>DroEre_CAF1 14412 120 + 1
CAUAGUGUCGAUGCCAUUGAGUGGCCUGCUGGCCCACUACGGUUUCGAUGGCGGCUGGCCGUCGAUCUUCUACGUCUUCGGGCUGAUCAGCGCCAUCUGGUGCGUCGUCUUCAUCUGGCU
..(((((.((((((.(((..((((((((..(((((((....)).((((((((.....))))))))..............)))))...))).)))))..)))))))))....)).)))... ( -46.90)
>DroYak_CAF1 14917 120 + 1
GAUAGUAUCGAUGCCGCUGAGUGGCCUGUUGGCCCACUACGGUUUCGAUGGCGGCUGGCCAUCGAUCUUCUACGUUUUCGGGUUGUUCAGCACCAUCUGGUGCGUGAUCUUCAUCUGGCU
(((.(((((((((..((((((..(((((..(((..((....)).((((((((.....))))))))........)))..)))))..))))))..)))).)))))...)))........... ( -48.40)
>DroPer_CAF1 51047 120 + 1
GAUCAUCUCGAUGCCGCUGAGCGGCCUGCUGGCCGAGUACGGCUUCGACGGCGGCUGGCCCUCGAUCUUCUACGUGUUCGGAAUAUUGAGCACCGUCUGGUGCGUGCUCUAUCUCUGUCU
.........((.((((.((..(((((....)))))..)))))).))(((((.((..(((.((((((.((((........)))).)))))(((((....)))))).)).)..)).))))). ( -44.00)
>consensus
CAUAGUAUCGAUGCCACUGAGUGGCCUGCUGGCCCACUACGGUUUCGAUGGCGGCUGGCCAUCGAUCUUCUACGUCUUCGGGCUGUUCAGCACCAUCUGGUGCGUGAUCUUCAUCUGCCU
.........(((((((((((((((((....)))).))).)))).((((((((.....))))))))..............))........(((((....)))))........))))..... (-32.42 = -32.53 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:48 2006