Locus 1617

Sequence ID X_DroMel_CAF1
Location 4,626,536 – 4,626,630
Length 94
Max. P 0.573764
window2647

overview

Window 7

Location 4,626,536 – 4,626,630
Length 94
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 77.63
Mean single sequence MFE -22.08
Consensus MFE -14.46
Energy contribution -14.41
Covariance contribution -0.06
Combinations/Pair 1.08
Mean z-score -1.22
Structure conservation index 0.65
SVM decision value 0.08
SVM RNA-class probability 0.573764
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4626536 94 + 22224390
UUCCCCAAUC-------------UCGA-GUCCUUCGCCCUAGCCGCCGCAUAAUCAGAGCAAUUUCAAAGUUGCGUCUGUCAGAAAGGCAGAAAAUG--UGGCCUUUCAU
..........-------------..((-(......((....)).(((((((.......((((((....)))))).((((((.....))))))..)))--))))..))).. ( -23.40)
>DroPse_CAF1 42998 81 + 1
UCUCCCCA-----------------------------UCUCUCCGCCGCAUAAUCAGAGCAAUUUCAAAGUUGUGUCUGUCAGAAAGGCACAAAAUGUGUGGCCCACGGU
........-----------------------------.......((((((((....(((....)))....((((((((.......))))))))..))))))))....... ( -21.10)
>DroSec_CAF1 13061 95 + 1
UUCCCCAAUC-------------UCGAAGUCCUUCGCCCUAGCCGCCGCAUAAUCAGAGCAAUUUCAAAGUUGCGUCUGUCAGAAAGGCAGAAAAUG--UGGCCUUCCAU
..........-------------..((((......((....)).(((((((.......((((((....)))))).((((((.....))))))..)))--))))))))... ( -25.50)
>DroEre_CAF1 11038 94 + 1
UUCUCCAAUC-------------UCGA-GUCCUUCUCCCUCGCCGCCGCAUAAUCAGAGCAAUUUCAAAGUUGCGUCUGUCAGAAAGGCACAAAAUG--UGGCCUUCCAU
..........-------------.(((-(.........))))..(((((((.......((((((....))))))((((.......)))).....)))--))))....... ( -21.40)
>DroYak_CAF1 11479 107 + 1
UUCUCCAUUCUCGAUUCAGAAUUUCGA-GUCCUUCGUCCUCGCUGCCGCAUAAUCAGAGCACUUUCAAAGUUGCGUCUGUCAGAAAGGCACAAAAUG--UGGCCUUCCAU
.........(((((.........))))-)...............(((((((.......(((((.....)).)))((((.......)))).....)))--))))....... ( -21.40)
>DroPer_CAF1 46804 79 + 1
UCUCCCCA-----------------------------UCUCUCCGCCGCAUAAUCAGAGCAAUUUCAAAGUUGUGUCUGUCAGAAAGGCACAAAAUG--UGGCCCACGGU
........-----------------------------.......(((((((.....(((....)))....((((((((.......)))))))).)))--))))....... ( -19.70)
>consensus
UUCCCCAAUC_____________UCGA_GUCCUUCGCCCUCGCCGCCGCAUAAUCAGAGCAAUUUCAAAGUUGCGUCUGUCAGAAAGGCACAAAAUG__UGGCCUUCCAU
............................................(((.......((((((((((....)))))).)))).......)))..................... (-14.46 = -14.41 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:47 2006