Locus 1613

Sequence ID X_DroMel_CAF1
Location 4,612,239 – 4,612,359
Length 120
Max. P 0.872449
window2639

overview

Window 9

Location 4,612,239 – 4,612,359
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 99.17
Mean single sequence MFE -30.02
Consensus MFE -29.31
Energy contribution -29.12
Covariance contribution -0.19
Combinations/Pair 1.03
Mean z-score -2.33
Structure conservation index 0.98
SVM decision value 0.88
SVM RNA-class probability 0.872449
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4612239 120 - 22224390
GUGGCUGGUGAAAAUAAGCAGGAAACUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUACGAGAAUCGAGACUUUGAUUCUCAGGGGCAAACGAUUGGCAAGG
...(((.((((((((...(((....)))..........((((((((.(.....).)).)))))).....))))))))(((((((((....)))))))))...)))............... ( -29.80)
>DroSec_CAF1 36304 120 - 1
GUGGCUGGUGAAAAUAAGCAGGAAACUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUACGAGAAUCGAGACUUUGAUUCUCAGGGGCUAACGAUUGGCAAGG
.(((((.((((((((...(((....)))..........((((((((.(.....).)).)))))).....))))))))(((((((((....)))))))))...)))))............. ( -31.70)
>DroEre_CAF1 39209 120 - 1
GUGGCUGGUGAAAAUAAGCAGGAAACUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUACGAGAAUCGAGACUUUGAUUCUCAGGGGCAAACGAUUGGCAAGG
...(((.((((((((...(((....)))..........((((((((.(.....).)).)))))).....))))))))(((((((((....)))))))))...)))............... ( -29.80)
>DroYak_CAF1 38426 120 - 1
GUGGCUGGUGAAAAUAAGCAGGAAACUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUAUGAGAAUCGAGACUUUGAUUCUCAGGGGCAAACGAUUGGCAAGG
...((..((((((((...(((....)))..........((((((((.(.....).)).)))))).....)))))).((((((((((....))))))))))..........))..)).... ( -28.80)
>consensus
GUGGCUGGUGAAAAUAAGCAGGAAACUGGAAAUUACAAAUGAUACGGAAAUAAUGCGAUAUCAUGAAUCAUUUUUACGAGAAUCGAGACUUUGAUUCUCAGGGGCAAACGAUUGGCAAGG
...(((.((((((((...(((....)))..........((((((((.(.....).)).)))))).....))))))))(((((((((....)))))))))...)))............... (-29.31 = -29.12 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:40 2006