| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,610,802 – 4,610,922 |
| Length | 120 |
| Max. P | 0.648544 |
| Location | 4,610,802 – 4,610,922 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.28 |
| Mean single sequence MFE | -32.40 |
| Consensus MFE | -16.61 |
| Energy contribution | -17.70 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.648544 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4610802 120 + 22224390 AUCCAUUUGGCAAAGUUAUGGCGUCUGGAAACUCAGGUUUGUGUACUUCUUCGGGUUUUAGGCACCUAACCCACUUUCGGUACAUCAUAACUGGGCUAAAACUCGUCAGAUCAUGGAAUG .((((((((((..(((((((..((((((((.....((((.((((...((....))......))))..))))...)))))).))..)))))))..))))))..((....))...))))... ( -34.90) >DroSec_CAF1 34902 120 + 1 AUCCAUUUGGCCAAGUUAUGGCGUCUGGGAUCUCAGGUAUGUGUACUUCUUCCGGUUUUGGCCACCUAACCCAGGAUUGGUACAUCAUAAAUCGGGUAAAAAUAGUCAGAUCAUGGAAUG .(((((...((((.....))))((((((.((((.(..((((((((((...(((((((..((...)).))))..)))..)))))).))))..).))))........)))))).)))))... ( -32.10) >DroYak_CAF1 37373 91 + 1 GUUCAUUUCUCCAAGUUAUGGCGUCUGGAACUUCAGGCUUGUGUACUUC-----------------------------GGUACCUCAUAACUUGGCUUAAAAUAGUCGGAUAGUGGAAUG .((((((..((((((((((((.((((((....))))))....((((...-----------------------------.)))).)))))))))((((......))))))).))))))... ( -30.20) >consensus AUCCAUUUGGCCAAGUUAUGGCGUCUGGAAACUCAGGUUUGUGUACUUCUUC_GGUUUU_G_CACCUAACCCA___U_GGUACAUCAUAACUCGGCUAAAAAUAGUCAGAUCAUGGAAUG .(((((.......(((((((..((((((....))))))..(((((((.....(((((..........)))))......)))))))))))))).(((........))).....)))))... (-16.61 = -17.70 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:36 2006