Locus 1608

Sequence ID X_DroMel_CAF1
Location 4,607,396 – 4,607,488
Length 92
Max. P 0.500000
window2632

overview

Window 2

Location 4,607,396 – 4,607,488
Length 92
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 82.01
Mean single sequence MFE -22.78
Consensus MFE -14.23
Energy contribution -14.73
Covariance contribution 0.50
Combinations/Pair 1.10
Mean z-score -1.67
Structure conservation index 0.62
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4607396 92 + 22224390
---C--GUGGCUCCUUAGGCUCGG-------------GCUUAAUAAAUGCAAAUGUGUCCAAGUAUGAACAAUUAUAGAAAGGAAAUUUGCAUUAAAAAUUUAUGUACUC------
---.--(((.....((((((....-------------))))))..(((((((((...(((...(((((....)))))....))).)))))))))...........)))..------ ( -18.10)
>DroPse_CAF1 39033 108 + 1
GCAG--GAGGCCUCUUUGGCCAGGACGAGCAUCCGCUGCUUAAUAAAUGCAAAUGUGUCCAAGUAUGAACAAUUAUAGAAAGGAAAUUUGCAUUAAAAAUUUAUGUACUC------
((((--..((((.....)))).(((......))).))))......(((((((((...(((...(((((....)))))....))).)))))))))................------ ( -29.10)
>DroEre_CAF1 35049 92 + 1
---C--GUGGCUGCUUAGGCUCGG-------------GCUUAAUAAAUGCAAAUGUGUCCAAGUAUGAACAAUUAUAGAAAGGAAAUUUGCAUUAAAAAUUUAUGUACUC------
---.--(((.....((((((....-------------))))))..(((((((((...(((...(((((....)))))....))).)))))))))...........)))..------ ( -18.10)
>DroWil_CAF1 45937 101 + 1
---UUUGCCGCCCCUCACAGAG------------GCGGCUUAAUAAAUGCAAAUGUGUCCAAGUAUGAACAAUUAUAGAAAGGAAAUUUGCAUUAAAAAUUUAUGUACUCGCCUUU
---...((((((.(.....).)------------)))))......(((((((((...(((...(((((....)))))....))).)))))))))...................... ( -25.60)
>DroYak_CAF1 33913 92 + 1
---C--GUGGCUCCUUAGACUCGG-------------GCUUAAUAAAUGCAAAUGUGUCCAAGUAUGAACAAUUAUAGAAAGGAAAUUUGCAUUAAAAAUUUAUGUACUC------
---.--..(((.((........))-------------))).....(((((((((...(((...(((((....)))))....))).)))))))))................------ ( -16.70)
>DroPer_CAF1 40081 108 + 1
GCAG--GAGGCCUCUUUGGCCAGGACGAGCAUCCGCUGCUUAAUAAAUGCAAAUGUGUCCAAGUAUGAACAAUUAUAGAAAGGAAAUUUGCAUUAAAAAUUUAUGUACUC------
((((--..((((.....)))).(((......))).))))......(((((((((...(((...(((((....)))))....))).)))))))))................------ ( -29.10)
>consensus
___C__GUGGCCCCUUAGGCUCGG_____________GCUUAAUAAAUGCAAAUGUGUCCAAGUAUGAACAAUUAUAGAAAGGAAAUUUGCAUUAAAAAUUUAUGUACUC______
........((((.....))))........................(((((((((...(((...(((((....)))))....))).)))))))))...................... (-14.23 = -14.73 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:33 2006