Locus 1607

Sequence ID X_DroMel_CAF1
Location 4,604,545 – 4,604,652
Length 107
Max. P 0.587026
window2631

overview

Window 1

Location 4,604,545 – 4,604,652
Length 107
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 83.41
Mean single sequence MFE -29.73
Consensus MFE -24.38
Energy contribution -24.38
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 0.82
SVM decision value 0.11
SVM RNA-class probability 0.587026
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4604545 107 + 22224390
------------AGGAUCGCUACUGCUAUUUCAUCUGGCUAAUGGCAGGGGUAUCACAUGGAUUGUGGGUCCUGCCC-CCCAGCUAAAGUCCCAACUUGCUGUUGAUAUUUUCUUCUUUU
------------.((((.((....)).........(((((...(((((((...(((((.....))))).))))))).-...)))))..))))((((.....))))............... ( -29.40)
>DroSec_CAF1 29354 107 + 1
------------GGGAUCGCUGCUGCUAUUUCAUCUGGCUAAUGGCAGGGGUAUCACAUGGAUUGUGGGUCCUGCCC-CCCAGCUAAAAUCCCAACUUGCUGUUGAUAUUUUCUUCUUUU
------------(((((.((((..((((.......))))....(((((((...(((((.....))))).))))))).-..))))....)))))........................... ( -30.50)
>DroEre_CAF1 32411 91 + 1
---------------------------AUUUCAUCUGGCUAAUGGCAGGGGUAUCACAUGGAUUGUGGGUCCUGCCC-CCGAGCUAA-AUCCCAACUUGUUGUUGAUAUUUUCUUCUUUU
---------------------------........(((((...(((((((...(((((.....))))).))))))).-...))))).-....((((.....))))............... ( -25.80)
>DroYak_CAF1 31100 120 + 1
ACUCCAGACUGCAGGAUCGCGACUGUCAUUUCAUCUGGCUAAUGGCAGGGGUAUCACAUGGAUUGUGGCUCCUGCCCCCCGAGCUAAAAUCCCAACUUGCUGUUGAUAUUCUCUUCUUUU
......(((.(((((.....((.((......))))(((((...(((((((((..((((.....))))))))))))).....))))).........))))).)))................ ( -33.20)
>consensus
____________AGGAUCGCUACUGCUAUUUCAUCUGGCUAAUGGCAGGGGUAUCACAUGGAUUGUGGGUCCUGCCC_CCCAGCUAAAAUCCCAACUUGCUGUUGAUAUUUUCUUCUUUU
...................................(((((...(((((((...(((((.....))))).))))))).....)))))......((((.....))))............... (-24.38 = -24.38 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:33 2006