Locus 1605

Sequence ID X_DroMel_CAF1
Location 4,602,368 – 4,602,478
Length 110
Max. P 0.891547
window2628

overview

Window 8

Location 4,602,368 – 4,602,478
Length 110
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 86.12
Mean single sequence MFE -22.80
Consensus MFE -16.27
Energy contribution -17.65
Covariance contribution 1.38
Combinations/Pair 1.04
Mean z-score -2.26
Structure conservation index 0.71
SVM decision value 0.97
SVM RNA-class probability 0.891547
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4602368 110 + 22224390
AUGCAAACAAUAAAGUAUUUCCUUUCUUGUCAGUCAAAAAGAUGAAAAUUAAAAAAUAUGUCUGCAUAUUCAGCUGUAGGAGUAUAAUGGCAGCGAAGGGAAACUUUUCC-
...........(((((..(((((((((((((((((.....)))............((((..(((((........)))))..))))..)))))).)))))))))))))...- ( -24.60)
>DroSec_CAF1 27337 110 + 1
AUGCAAACAAUAAAGUAUUUCCUUUCUUGUCAGUCAAAAAGACGAAAAUUAAAAAAUAUGUCUGCAUAUUCAGCUGUAGGAGUAUAAUGGCAGCGAAGGGAAACUUUUGC-
..(((((......(((..(((((((((((((((((.....)))............((((..(((((........)))))..))))..)))))).))))))))))))))))- ( -27.10)
>DroEre_CAF1 30316 110 + 1
AUGCAAACAAUAAAGUAUUUCCUUUCUUGUCAGUCAAAAAGACGAAAAUUAAAAAAUAUGUUUGCAUAUACAGCUGUAUGAGUAUAAUGGCAGAGAAGGCAAACUUUUCU-
(((((((((..((((......)))).(((((.........))))).............))))))))).....(((((.........)))))(((((((.....)))))))- ( -21.70)
>DroYak_CAF1 28836 94 + 1
AUGCAAACAAUAAAGUAUUUCCUUUCUUGUCACUCAAAAAGACGAAAAUUAAAAAAUAUGUUUGCAGAGAAA-----------------GCAGAGAAGGGAAACUUUUCCC
...........(((((..(((((((((((((.........)))))...............(((((.......-----------------)))))))))))))))))).... ( -17.80)
>consensus
AUGCAAACAAUAAAGUAUUUCCUUUCUUGUCAGUCAAAAAGACGAAAAUUAAAAAAUAUGUCUGCAUAUACAGCUGUAGGAGUAUAAUGGCAGAGAAGGGAAACUUUUCC_
...........(((((.(((((((..(((((((((.....)))............(((((....)))))..................))))))..)))))))))))).... (-16.27 = -17.65 +   1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:30 2006