Locus 1602

Sequence ID X_DroMel_CAF1
Location 4,600,691 – 4,600,803
Length 112
Max. P 0.523574
window2623

overview

Window 3

Location 4,600,691 – 4,600,803
Length 112
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 73.06
Mean single sequence MFE -38.13
Consensus MFE -22.26
Energy contribution -21.27
Covariance contribution -0.98
Combinations/Pair 1.35
Mean z-score -1.51
Structure conservation index 0.58
SVM decision value -0.02
SVM RNA-class probability 0.523574
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4600691 112 + 22224390
---AAAGCGGUAAUGGAGCUGGGACGUAACCUCUUGGAUAACUUCAGAUUGGAUGUGAAUGAUCAACUCCAAUCUGCUCGAGGGUAAACCUCGAUAACUCAGUCGCAACACGUUA-----
---..((((((..((..((((((......((....)).......(((((((((..(((....)))..))))))))).((((((.....))))))...))))))..)))).)))).----- ( -36.40)
>DroSec_CAF1 25522 120 + 1
GACAAAGGGGUGAUGGAGCUGGGACGUAACCCCUUGGAGAACUUCAGAUUGUAUGUGAAUGAUGAACUUCAAUCUGCUCUAGGGUAAACCUGGACAACUCCGUCGCAAUACGUUUCUUCU
(((.(((((((.(((.........))).)))))))((((.....(((((((...((.........))..))))))).((((((.....))))))...)))))))................ ( -38.20)
>DroEre_CAF1 28494 119 + 1
GACGCAGCGCUGCAGCACCUGGGGCGGAACCUCAUGGGCAACUUCCGAUUGGAUGUGAGCAAUCAACUCCAGGGGGCUCAGGGGUAGCUCUCGACAACUCCAUCGCAACUCGCU-CUUCU
((.(.((((.((((((.(((((((..((..(((((((....))(((....))).)))))...))..)))))))..)))..(((((.((....).).)))))...)))...))))-).)). ( -39.80)
>consensus
GACAAAGCGGUGAUGGAGCUGGGACGUAACCUCUUGGACAACUUCAGAUUGGAUGUGAAUGAUCAACUCCAAUCUGCUCAAGGGUAAACCUCGACAACUCCGUCGCAACACGUU_CUUCU
......................(((((.......((((......(((((((((.((.........))))))))))).((((((.....))))))....)))).......)))))...... (-22.26 = -21.27 +  -0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:25 2006