Locus 1601

Sequence ID X_DroMel_CAF1
Location 4,595,943 – 4,596,049
Length 106
Max. P 0.614632
window2622

overview

Window 2

Location 4,595,943 – 4,596,049
Length 106
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 81.02
Mean single sequence MFE -26.77
Consensus MFE -14.43
Energy contribution -16.30
Covariance contribution 1.87
Combinations/Pair 1.08
Mean z-score -2.24
Structure conservation index 0.54
SVM decision value 0.16
SVM RNA-class probability 0.614632
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4595943 106 + 22224390
CUUUUCCCCCCAAGACACUUUUUUC---CC-CCAUUUUUCCACCUCCUUUGUUGCUUUUGCCUUUUGGGC----------UGCCAUUGGCAGGACAUUUUUGGCUAGAAAAAUUGCGGGU
........................(---((-(.(((((((.....((.....((.(((((((...(((..----------..)))..))))))))).....))...))))))).).))). ( -22.30)
>DroSec_CAF1 20464 102 + 1
CUUUUUC-CCCAAGACACCUU-UUC---CC-CCAUUUUUCCACCUCUUUUGUUGCUUUUGCCUCU--GGC----------UGCCAUUGGCAGGACAUUUUUGGCUAGAAAAAUUGCGGGU
.......-.............-..(---((-(.(((((((..((.....((((....(((((..(--((.----------..)))..))))))))).....))...))))))).).))). ( -21.20)
>DroEre_CAF1 23071 101 + 1
CUUUUGC-CUCCAUUCACCUUUUGC------CAAUUUUUCCACCUCCUUUGUUGCUUCUGCCUGU--GGC----------UGCCAUUGGCAGGACAUUUUUGGCUAGAAAAAUUGCGGAU
.......-............(((((------.((((((((.....((.....((.(((((((.((--((.----------..)))).))))))))).....))...))))))))))))). ( -25.60)
>DroYak_CAF1 20480 117 + 1
CUUUUCC-CGCAAUUCACCUUUUGCUCGCCGCAUUUUCCGCAACUCCUUUGCUUCUUUUGCCUGU--GGCAAAAGUCCUGUGCCAUUGGCAGGACAUUUUUGGCUAGAAAAAUUGCGGGU
.....((-(((((((.....(((.((.((((.....(((((((.....))))......((((.((--((((.........)))))).)))))))......)))).)))))))))))))). ( -38.00)
>consensus
CUUUUCC_CCCAAGACACCUUUUGC___CC_CAAUUUUUCCACCUCCUUUGUUGCUUUUGCCUGU__GGC__________UGCCAUUGGCAGGACAUUUUUGGCUAGAAAAAUUGCGGGU
............................((.(((((((((.....((.....((.(((((((.....(((...........)))...))))))))).....))...))))))))).)).. (-14.43 = -16.30 +   1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:24 2006