Locus 1599

Sequence ID X_DroMel_CAF1
Location 4,594,681 – 4,594,781
Length 100
Max. P 0.987947
window2620

overview

Window 0

Location 4,594,681 – 4,594,781
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 94.58
Mean single sequence MFE -37.77
Consensus MFE -35.67
Energy contribution -36.33
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -3.22
Structure conservation index 0.94
SVM decision value 2.10
SVM RNA-class probability 0.987947
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4594681 100 + 22224390
UGGAAGCGGGCCAAAUCAGUUAAUUGAUGUUGAAAUCGGGCGAAAGUCCUUGGCCCAAAACGGCCGGACGGCCAAAUGGCCCUUCAAUGCUUCUUGCUCU
.((((((((((((((((((....))))).........((((....))))))))))).........(((.((((....)))).)))...))))))...... ( -41.60)
>DroEre_CAF1 21848 95 + 1
UGGAAGCGGGCCAAAUCAGUUAAUUGAUGUUGAAAUCGGGCGAAAGUCCUUGGCCCAAA-C----GGCCGGCCAAAUGGCCCUUCAAUGGUUCUUGCUCU
.(((.(((((((..(((((....)))))((((((...((((....))))..((((....-.----))))((((....)))).)))))))))))..))))) ( -35.60)
>DroYak_CAF1 19275 95 + 1
UGGAAGCGGGCCAAAUCAGUUAAUUGAUGUUGAAAUCGGGCGAAAGUCCUUGGCCCAAA-C----GGCCGGCCAAAUGGCCCUUCAAUGCUACUUGCUCU
..((((.((((((((((((....))))).........((((....)))))))))))...-.----(((((......)))))))))...((.....))... ( -36.10)
>consensus
UGGAAGCGGGCCAAAUCAGUUAAUUGAUGUUGAAAUCGGGCGAAAGUCCUUGGCCCAAA_C____GGCCGGCCAAAUGGCCCUUCAAUGCUUCUUGCUCU
.((((((((((((((((((....))))).........((((....))))))))))).........((..((((....))))..))...))))))...... (-35.67 = -36.33 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:22 2006