Locus 1598

Sequence ID X_DroMel_CAF1
Location 4,594,257 – 4,594,356
Length 99
Max. P 0.631982
window2619

overview

Window 9

Location 4,594,257 – 4,594,356
Length 99
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 89.14
Mean single sequence MFE -29.88
Consensus MFE -25.99
Energy contribution -25.77
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.52
Structure conservation index 0.87
SVM decision value 0.20
SVM RNA-class probability 0.631982
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4594257 99 + 22224390
CAUGUUCAAUGCUCAUGAUUGAAAGUUUGUGCUUUGGCGGUUUUCGUUGGCA--GUA-AACCGCCAACCGCUAAGCCCACACUUUCCCUU--UUGGAAAAGCGG
.........((((.......((((((.((.((((.((((((......((((.--...-....)))))))))))))).)).))))))((..--..))...)))). ( -29.40)
>DroPse_CAF1 22465 92 + 1
CAUGUUCAAUGCUCAUGAUUGAAAGUUUGUGCUGUGGCGGUUUUCGUUGGCA--GUA-GACCGCCAACCGCUAAGCCCACACUUUCCGC---------AAUCGU
..............((((((((((((.((.(((.(((((((......((((.--...-....)))))))))))))).)).))))))...---------)))))) ( -28.00)
>DroSec_CAF1 18081 101 + 1
CAUGUUCAAUGCUCAUGAUUGAAAGUUUGUGCUUUGGCGGUUUUCGUUGGCAGAGUA-AACCGCCAACCGCUAAGCCCACACUUUCCCUU--UUGGAAAAGCGG
.........((((.......((((((.((.((((.((((((......((((.(....-..).)))))))))))))).)).))))))((..--..))...)))). ( -28.80)
>DroEre_CAF1 21407 97 + 1
CAUGUUCAAUGCUCAUGAUUGAAAGUUUGUGCUUUGGCGGUUUGCGUUGGCA--GUA-AACCGCCGACCGCUAAGCCCACACUUUCCU----UCGGAAAAGCGG
.........((((..(((..((((((.((.(((((((((((((((.......--)))-)))))))))......))).)).))))))..----)))....)))). ( -34.40)
>DroYak_CAF1 18855 102 + 1
CAUGUUCAAUGCUCAUGAUUGAAAGUUUGUGCUUUGGCGGUUUUCGUUGGCA--GCAAAACCGCCGACCGCUAAGCCCACACUUUCCCCUGCUCGGAAAAGCGG
((((.........))))...((((((.((.((((((((((((((.((.....--)))))))))))))......))).)).))))))..(((((......))))) ( -30.70)
>DroPer_CAF1 23263 92 + 1
CAUGUUCAAUGCUCAUGAUUGAAAGUUUGUGCUGUGGCGGUUUUCGCUGGCA--GUA-GACCGCCAACCGCUAAGCCCACACUUUCCGC---------AAUCGU
..............((((((((((((.((.(((.(((((((......((((.--...-....)))))))))))))).)).))))))...---------)))))) ( -28.00)
>consensus
CAUGUUCAAUGCUCAUGAUUGAAAGUUUGUGCUUUGGCGGUUUUCGUUGGCA__GUA_AACCGCCAACCGCUAAGCCCACACUUUCCCC___U_GGAAAAGCGG
((((.........))))...((((((.((.(((.(((((((......((((...........)))))))))))))).)).)))))).................. (-25.99 = -25.77 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:21 2006