Locus 1597

Sequence ID X_DroMel_CAF1
Location 4,592,646 – 4,592,737
Length 91
Max. P 0.941226
window2618

overview

Window 8

Location 4,592,646 – 4,592,737
Length 91
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 75.16
Mean single sequence MFE -28.96
Consensus MFE -15.10
Energy contribution -15.91
Covariance contribution 0.81
Combinations/Pair 1.12
Mean z-score -2.37
Structure conservation index 0.52
SVM decision value 1.32
SVM RNA-class probability 0.941226
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4592646 91 + 22224390
UGGCCCAUAACUUUGGGCCCA--CAUCGAUAAAUGGCCAGA------------AAUGUAAG----AGCAUGGGCAAACAUCAAUUGUCCG--AACGUUAA------ACGUGGCCAAG
.((((((......))))))..--..........(((((...------------.((((...----.))))((((((.......)))))).--.(((....------.)))))))).. ( -30.20)
>DroSec_CAF1 16509 95 + 1
UGGCCCAUAACUUUGGGCCCACACAUCGAUAAAUGGGCAGA------------AAAGCAAGGAGCAGCAUG-GCAAACAUCAAUUGG-CG--AACGUUAA------ACGUGGCCAAG
.((((((......))))))........(((.....(.((..------------...((.....))....))-.)....)))..((((-(.--.(((....------.))).))))). ( -25.50)
>DroEre_CAF1 19761 92 + 1
UGGCCCAUAACUUUGGGCAU---CAUCAAUAAAUGGCCAGA------GU---CAAAGCAAGGA---ACAUG-GCUAGCAUCAAUUGG-CG--AAAGUUGA------ACGUGGCCAAG
..(((((......)))))..---..........((((((.(------((---((.........---...))-)))........(..(-(.--...))..)------...)))))).. ( -28.20)
>DroYak_CAF1 17142 109 + 1
UGGCCCAUAACUUUGGGCGC---CGUCAAUAAAUGGCCAGCAGAAGAAGCAGAAGAGCAAGGA---ACAUG-GCUAGCAUUAAUUGG-CGAGAAAGUUAAACGUUAACGUGGCCUAG
.((((..(((((((...(((---((........((((((.........((......)).....---...))-))))........)))-))..))))))).(((....)))))))... ( -31.92)
>consensus
UGGCCCAUAACUUUGGGCCC___CAUCAAUAAAUGGCCAGA____________AAAGCAAGGA___ACAUG_GCAAACAUCAAUUGG_CG__AAAGUUAA______ACGUGGCCAAG
.((((((......))))))..............((((((................(((..............)))..((.....)).......................)))))).. (-15.10 = -15.91 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:20 2006