Locus 1596

Sequence ID X_DroMel_CAF1
Location 4,590,654 – 4,590,762
Length 108
Max. P 0.990190
window2617

overview

Window 7

Location 4,590,654 – 4,590,762
Length 108
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 75.19
Mean single sequence MFE -27.50
Consensus MFE -16.38
Energy contribution -16.35
Covariance contribution -0.03
Combinations/Pair 1.11
Mean z-score -2.49
Structure conservation index 0.60
SVM decision value 2.20
SVM RNA-class probability 0.990190
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4590654 108 - 22224390
GCCCAUUUCCACAACCACCCACCAACCC----CCCCCCUCCAA-CCCCGGGGACACAUUUUGUGCGAUAAUUAUCGAUGUCCUGCCGUCAAAGACAAGCAUAGAAUGAAGCC-C
((..........................----..((((.....-....))))...(((((((((((((....)))((((......))))........))))))))))..)).-. ( -22.90)
>DroPse_CAF1 18172 106 - 1
GCCCAUUGCGGAUGCCG--UGU-----CGGCAUCGGCCGUCGGCCCUCCAGGACACAUUUUGUACGAUAAUUAUCGAUGUCCUUCCGUCACAGACAAGCACAAAAUGAAACC-U
(((.((.((.(((((((--...-----))))))).)).)).))).....(((...((((((((.((((....)))).((((...........))))...))))))))...))-) ( -33.90)
>DroSec_CAF1 14605 111 - 1
GCCCAUUUCCACCUACA--ACCCACCCCCUACCCCCCCUUCAACCCCCGGGGACACAUUUUGUGCGAUAAUUAUCGAUGUCCUCCCGUCAAAGACAAGCACAGAAUGAAGCC-C
((...............--...............((((..........))))...(((((((((((((....)))((((......))))........))))))))))..)).-. ( -24.70)
>DroSim_CAF1 13922 111 - 1
GCCCAUUUCCACCCCCA--CACCACCCCCUUACCCCCCUUCAACCCCCGGGGACACAUUUUGUGCGAUAAUUAUCGAUGUCCUCCCGUCAAAGACAAGCACAGAAUGAAGCC-C
((...............--...............((((..........))))...(((((((((((((....)))((((......))))........))))))))))..)).-. ( -24.70)
>DroEre_CAF1 17655 99 - 1
GCCCAUUUUCCGC----------CCCCCCUUCCGC----CCCAA-CCCGGGGACACAUUUUGUGCGAUAAUUAUCGAUGUCCGCCCGUCAAAGACAAGCACAGAAUGAAGCCCC
...........((----------..........((----(((..-...)))).).(((((((((((((....)))((((......))))........))))))))))..))... ( -26.20)
>DroPer_CAF1 19031 106 - 1
GCCCAUUGCGGAUGCCG--UGU-----CGGCAUCGGCCUUCGGCCCUCCAGGACACAUUUUGUACGAUAAUUAUCGAUGUCCUUCCGUCACAGACAAGCACAAAAUGAAACC-U
(((.(..((.(((((((--...-----))))))).))..).))).....(((...((((((((.((((....)))).((((...........))))...))))))))...))-) ( -32.60)
>consensus
GCCCAUUUCCACCGCCA__CAC_ACCCCCUCACCCCCCUUCAACCCCCGGGGACACAUUUUGUGCGAUAAUUAUCGAUGUCCUCCCGUCAAAGACAAGCACAGAAUGAAGCC_C
..................................................((...(((((((((((((....)))((((......))))........))))))))))...)).. (-16.38 = -16.35 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:19 2006