Locus 1592

Sequence ID X_DroMel_CAF1
Location 4,576,770 – 4,576,865
Length 95
Max. P 0.983037
window2609

overview

Window 9

Location 4,576,770 – 4,576,865
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 76.69
Mean single sequence MFE -14.57
Consensus MFE -9.64
Energy contribution -9.87
Covariance contribution 0.23
Combinations/Pair 1.11
Mean z-score -2.16
Structure conservation index 0.66
SVM decision value 1.93
SVM RNA-class probability 0.983037
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4576770 95 - 22224390
AUAAAUAACACUCAAAAAAACAUUUAAGUGAAAAUUAAAAGAGGGUGGGAAAGUUACAUUUCUUGCACUCGAAAGUAAGCAAUUAUGUUUACGAG
........((((.(((......))).))))..........(((.(..(((((......)))))..).)))....(((((((....)))))))... ( -21.10)
>DroSec_CAF1 6309 76 - 1
AUAAAUAACACUUAAAAAAACAUUUAGGC-AAAAUUAAUAAAGGGUGGGAAAGUUGAAUUUCUUGCUU----------------AAGUUUAAG--
.(((((....((((((......)))))).-............(((..(((((......)))))..)))----------------..)))))..-- ( -11.60)
>DroSim_CAF1 7058 76 - 1
AUAAAUAACACUUAAAAAAACAUUUAGGC-AAAAUUAAUAAAGGGUGGGAAAGUUGAAUUUCUUGCUU----------------CAGUUUAAG--
.(((((....((((((......)))))).-............(((..(((((......)))))..)))----------------..)))))..-- ( -11.00)
>consensus
AUAAAUAACACUUAAAAAAACAUUUAGGC_AAAAUUAAUAAAGGGUGGGAAAGUUGAAUUUCUUGCUU________________AAGUUUAAG__
.(((((....((((((......))))))..............(((..(((((......)))))..)))..................))))).... ( -9.64 =  -9.87 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:12 2006