Locus 1590

Sequence ID X_DroMel_CAF1
Location 4,574,379 – 4,574,475
Length 96
Max. P 0.638405
window2607

overview

Window 7

Location 4,574,379 – 4,574,475
Length 96
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 76.28
Mean single sequence MFE -28.34
Consensus MFE -17.38
Energy contribution -18.26
Covariance contribution 0.88
Combinations/Pair 1.05
Mean z-score -1.63
Structure conservation index 0.61
SVM decision value 0.22
SVM RNA-class probability 0.638405
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4574379 96 + 22224390
UCAAACCGCCCAGCCUUCCAGGAUAAUUGGUUCGUUGGGAGCUGGGAGCUGGGAGUUCGGAUUGAGAGCUGGCCAUCG---AUGGCGAAUGCUAAAAUA
((((.(((((((((.((((((..((((......))))....))))))))))))....))).)))).((((.((((...---.)))).)..)))...... ( -32.20)
>DroSec_CAF1 4068 76 + 1
UCAAACCGCCCGGCCUUCCAGGAUAAUUGGUUCGUUGGGAGCUGGGAG--------------------CUGGCCAUCG---AUGGCAAAUGCUAAAAUA
........((((((.((((((((........)).))))))))))))((--------------------(..((((...---.))))....)))...... ( -26.50)
>DroSim_CAF1 4738 76 + 1
UCAAACCGCCCAGCCUUCCAGGAUAAUUGGUUCGUUGGGAGCUGGGAG--------------------CUGGCCAUCG---AUGGCAAAUGCUAAAAUA
........((((((.((((((((........)).))))))))))))((--------------------(..((((...---.))))....)))...... ( -27.20)
>DroEre_CAF1 3986 84 + 1
UCAAACCGCCCACCUUUCCAGGAUAAUUGGUUCGUUGGGAGUUGGCCAUGGCGA---------------UGGCGAUGGCGAAUGCCGAAUGCCGAACUA
............(((....)))....(((((...((((..(((.(((((.((..---------------..)).))))).))).))))..))))).... ( -26.70)
>DroYak_CAF1 4122 93 + 1
UCAAACCGCCCACCUUUCCAGGAUAAUUGGUUCGUUGGGAGUGGGUAGUUGCUAGUC---GUUAGUAGUUGGCCAUCG---AUGGCGAAUGCUAAAAUA
...(((..(((((..((((((((........)).)))))))))))..))).......---.((((((.((.((((...---.)))).)))))))).... ( -29.10)
>consensus
UCAAACCGCCCAGCCUUCCAGGAUAAUUGGUUCGUUGGGAGCUGGGAG__G__A______________CUGGCCAUCG___AUGGCGAAUGCUAAAAUA
.......(((((((.((((((((........)).)))))))))))..........................(((((.....)))))....))....... (-17.38 = -18.26 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:10 2006