| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 572,120 – 572,227 |
| Length | 107 |
| Max. P | 0.945533 |
| Location | 572,120 – 572,227 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 92.45 |
| Mean single sequence MFE | -36.27 |
| Consensus MFE | -27.95 |
| Energy contribution | -27.73 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.683445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 572120 107 + 22224390 AGGAUGGAGAAGGGGUCGGAAGGUAGGGGAAAGUAGCUGAGGAGGAGCCACUACUGAAGCUGCAGAAGCUGCAGCGGCCGCUGAUAAAGCAGCUUGACAGCUGCGAG ..........((.((((....(((((.((....(..(....)..)..)).)))))...(((((((...))))))))))).))......((((((....))))))... ( -36.00) >DroSec_CAF1 35895 104 + 1 AGGAUGGAGAAGGGGCUGGGGAGUAGG-GAAAGGGGCCGAGGAGGAGCCACUACUGAAGCUACAGAAGCUGCAGCGGCCGCUGAUAAAGCAGCUUGACAGC--CGAG .............(((((..((((...-......(((((.((.....))....(((.((((.....)))).))))))))(((.....))).))))..))))--)... ( -36.40) >DroSim_CAF1 35433 104 + 1 AGGAUGGAGAAGGGGCUGGGGAGUAGG-GAAAGGGGCCGAGGAGGAGCCACUACUGAAGCUACAGAAGCUGCAGCGGCCGCUGAUAAAGCAGCUUGACAGC--CGAG .............(((((..((((...-......(((((.((.....))....(((.((((.....)))).))))))))(((.....))).))))..))))--)... ( -36.40) >consensus AGGAUGGAGAAGGGGCUGGGGAGUAGG_GAAAGGGGCCGAGGAGGAGCCACUACUGAAGCUACAGAAGCUGCAGCGGCCGCUGAUAAAGCAGCUUGACAGC__CGAG ..............((((..((((..........(((((.((.....))....(((.((((.....)))).))))))))(((.....))).))))..))))...... (-27.95 = -27.73 + -0.21)
| Location | 572,120 – 572,227 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 92.45 |
| Mean single sequence MFE | -30.93 |
| Consensus MFE | -26.12 |
| Energy contribution | -25.90 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -3.48 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.945533 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 572120 107 - 22224390 CUCGCAGCUGUCAAGCUGCUUUAUCAGCGGCCGCUGCAGCUUCUGCAGCUUCAGUAGUGGCUCCUCCUCAGCUACUUUCCCCUACCUUCCGACCCCUUCUCCAUCCU ...((((((....))))))........(((..(((((((...)))))))......(((((((.......)))))))............)))................ ( -31.20) >DroSec_CAF1 35895 104 - 1 CUCG--GCUGUCAAGCUGCUUUAUCAGCGGCCGCUGCAGCUUCUGUAGCUUCAGUAGUGGCUCCUCCUCGGCCCCUUUC-CCUACUCCCCAGCCCCUUCUCCAUCCU ...(--((((....((((......))))(((((((((((...))))))).......(.((.....)).)))))......-.........)))))............. ( -30.80) >DroSim_CAF1 35433 104 - 1 CUCG--GCUGUCAAGCUGCUUUAUCAGCGGCCGCUGCAGCUUCUGUAGCUUCAGUAGUGGCUCCUCCUCGGCCCCUUUC-CCUACUCCCCAGCCCCUUCUCCAUCCU ...(--((((....((((......))))(((((((((((...))))))).......(.((.....)).)))))......-.........)))))............. ( -30.80) >consensus CUCG__GCUGUCAAGCUGCUUUAUCAGCGGCCGCUGCAGCUUCUGUAGCUUCAGUAGUGGCUCCUCCUCGGCCCCUUUC_CCUACUCCCCAGCCCCUUCUCCAUCCU ......((((....((((......))))(((((((((((((.....))))...)))))))))......))))................................... (-26.12 = -25.90 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:32 2006