Locus 1586

Sequence ID X_DroMel_CAF1
Location 4,544,080 – 4,544,185
Length 105
Max. P 0.883018
window2602

overview

Window 2

Location 4,544,080 – 4,544,185
Length 105
Sequences 4
Columns 105
Reading direction reverse
Mean pairwise identity 76.21
Mean single sequence MFE -30.95
Consensus MFE -19.59
Energy contribution -19.78
Covariance contribution 0.19
Combinations/Pair 1.19
Mean z-score -1.92
Structure conservation index 0.63
SVM decision value 0.92
SVM RNA-class probability 0.883018
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4544080 105 - 22224390
GCGGUUGUUCUUGCUGAUUAUCCUCCAGUUCGGCUCGUCGACAACUGCUGCAGCUGGUGGCAUCGCUGUCCUCCACAAUGGUGCCAUCUUCAUCGUCCUCGUCCU
(((((((((...(((((............))))).....)))))))))....(..((((((((((.(((.....))).))))))))))..).............. ( -34.00)
>DroVir_CAF1 8920 97 - 1
--------UGAUACUCAGCCUCCUCCAUUUCGGCACGCAGGCAGCUGCUGCAACUGGUUGCGUCGCUGUCCUCCACUAUGGUGUCAUUAUCAUCUUCUUCAACAU
--------((((((.(((((...........)))..(.(((((((.((.((((....)))))).)))).))).)....))))))))................... ( -26.00)
>DroSec_CAF1 7023 105 - 1
GCGGCUGUUCUUGCUGAUUAUCCUCCAGUUCGGCUCGUCGACAACUGCUGCAGCUGGUGGCAUCGCUGUCCUCCACAAUGGUGCCAUCAUCAUCGUCCUCGUCUU
(((((((((...(((((............))))).....))))...))))).(.(((((((((((.(((.....))).))))))))))).).............. ( -32.40)
>DroPer_CAF1 679 97 - 1
--------AGCUGCUGCAGCUCCUCCAAUUCGGCGCGACGACAACUGCUGCAACUGGUGGCAUCACUGUCCUCGACAAUGGUGCCAUCAUCUGUGUCUUCAUCCU
--------.((....)).((.((........)).))((.(((.......(((..(((((((((((.((((...)))).)))))))))))..)))))).))..... ( -31.41)
>consensus
________UCUUGCUGAUUAUCCUCCAGUUCGGCUCGUCGACAACUGCUGCAACUGGUGGCAUCGCUGUCCUCCACAAUGGUGCCAUCAUCAUCGUCCUCAUCCU
........................((((((((((............)))).))))))((((((((.(((.....))).))))))))................... (-19.59 = -19.78 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:06 2006