| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,543,505 – 4,543,619 |
| Length | 114 |
| Max. P | 0.655196 |
| Location | 4,543,505 – 4,543,619 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 77.88 |
| Mean single sequence MFE | -26.55 |
| Consensus MFE | -16.35 |
| Energy contribution | -16.18 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.655196 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4543505 114 - 22224390 UACGAUCCAAAGUUGCGACCGACAAUGCAAUGCCAUGUGGGAUUGUAUUUUUUGUCGAACUCCUUCUUGAUGUAGGCCGCAAUGUCCUGCAAU-UGAAUGGA--AAG--UCAAAAGAAU .((..((((.((((.((((.((.((((((((.((....)).)))))))).)).))))))))..(((....((((((.(.....).))))))..-.)))))))--..)--)......... ( -31.00) >DroVir_CAF1 8234 114 - 1 UACGAUCCAAAGUUGCGGCCCACAAUGCAAUGCCAUGUGGGAUUGUAUUUCUUGUCGAAUUCCUUCUUGAUAUAAGCCGCAAUAUCCUGCAAUAAGAAUAGA--GAGCGACAUAUU--- ..((.(((...((((((((....((((((((.((....)).))))))))...((((((........))))))...))))))))...((......))....).--)).)).......--- ( -28.10) >DroPse_CAF1 5343 110 - 1 UACGAUCCAAAGUUGCGUCCCACAAUGCAAUGCCAUGUUGGAUUGUAUUUCUUGUCGAAUUCUUUCUUGAUAUAGGCAGCAAUGUCCUGCAAA-AAUAU-----AAA--AGAAAACA-A ((((((((((.(((((((......)))))))......))))))))))(((((((((((........))))).((((((....)).))))....-.....-----..)--)))))...-. ( -28.50) >DroWil_CAF1 16774 116 - 1 UAGGAGCCAAAAUUGCGUCCAACAAUGCAAUGCCAUGUGGGAUUGUAUUUUUUGUCGAACUCCUUCUUGAUAUAAGCAGCAAUAUCCUGAAAG-AAAAUGAGAGAAA--UUGAAAUCAU ..(((((.......)).)))...((((((((.((....)).))))))))((((.(((...((.(((..(((((........)))))..))).)-)...))).)))).--.......... ( -23.20) >DroYak_CAF1 12573 114 - 1 UACGAUCCAAAGUUGCGACCGACAAUGCAAUGCCAUGUGGGAUUGUAUUUUUUGUCAAACUCCUUCUUGAUGUAGGCCGCAAUGUCCUGCAAU-UGAAUGAA--AAG--CCAAAAUAAU ..............(((((.((.((((((((.((....)).)))))))).)).)))....((.(((....((((((.(.....).))))))..-.))).)).--..)--)......... ( -25.10) >DroPer_CAF1 2 87 - 1 UACGAUCCAAAGUUGCGUCCCACAAUGCAAUGCCAAGUUGGAUUGUAUUUCUUGUCGAAUUCUUUCUUGAUAUAGGCGGCAAUGUCC-------------------------------- ((((((((((.(((((((......)))))))......))))))))))....((((((...((......))......)))))).....-------------------------------- ( -23.40) >consensus UACGAUCCAAAGUUGCGUCCCACAAUGCAAUGCCAUGUGGGAUUGUAUUUCUUGUCGAACUCCUUCUUGAUAUAGGCCGCAAUGUCCUGCAAU_AGAAUG_A__AAG__ACAAAAUA_U ...........(((((.......((((((((.((....)).))))))))...((((((........))))))......))))).................................... (-16.35 = -16.18 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:05 2006