Locus 1584

Sequence ID	X_DroMel_CAF1
Location	4,541,000 – 4,541,100
Length	100
Max. P	0.561107

overview

Window 0

Location	4,541,000 – 4,541,100
Length	100
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	69.55
Mean single sequence MFE	-32.60
Consensus MFE	-14.54
Energy contribution	-18.60
Covariance contribution	4.06
Combinations/Pair	1.14
Mean z-score	-1.92
Structure conservation index	0.45
SVM decision value	0.05
SVM RNA-class probability	0.561107
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4541000 100 + 22224390
UGUUUUUGCCAUGCCUCAAAACGUGUCCAGGCAUAUUUUCCGGGGCUCAAAUGCCA---------UU---CCAGGUGUAGCCUAAUUGCAGUCG--GUGCAGUUGGUCU-GGACA
.(((((.((...))...))))).(((((((((..........(((((...(((((.---------..---...))))))))))(((((((....--.))))))).))))-))))) ( -31.70)
>DroSec_CAF1 3958 105 + 1
UCUUUUUGUCAUGCCUCAAAACGUGUCCAGGCAUAUUUUCCGGGGCUCAAAUGCCA---------UCCAGCCAGGUGUAGCCUAAUUGCAGUCGUCGUGCAGUUGGUCUUGGAC-
....((((....(((((((((..(((....)))..))))..))))).)))).....---------((((((((((.....)))(((((((.......))))))))))..)))).- ( -27.50)
>DroEre_CAF1 9288 106 + 1
--CUCUUUCCAUGCCUUAAAACGUGUCCAGGCAUAUUUGCUGGGGCUCAAAAACCUGGGUACAUUUU---CCAGGUGUGGCCUAAAUGGUUAGG--AGGCAGUUGGUCU-GGAC-
--.(((..(((((((((..(((....((((.((....))))))(((.((...(((((((.......)---)))))).)))))......)))..)--)))))..)))...-))).- ( -38.70)
>DroYak_CAF1 10026 97 + 1
UCUUUUUUCCAUAACUUAAAACGUGUCCUGGCUUAUUUGCCGGGGCUCAAAAGCCUGGGCACAUUUU---CCAGAAGUGGCCCAAAAA-------------AAAUGUCU-GGAA-
......(((((...........(.((((((((......)))))))).).......(((((.((((((---...)))))))))))....-------------.......)-))))- ( -32.50)
>consensus
UCUUUUUGCCAUGCCUCAAAACGUGUCCAGGCAUAUUUGCCGGGGCUCAAAAGCCA_________UU___CCAGGUGUAGCCUAAAUGCAGUCG__GUGCAGUUGGUCU_GGAC_
........................((((((((..........(((((...((((((((............)))))))))))))(((((((.......))))))).)))).)))). (-14.54 = -18.60 +   4.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:04 2006