Locus 158

Sequence ID X_DroMel_CAF1
Location 569,776 – 569,870
Length 94
Max. P 0.914422
window251

overview

Window 1

Location 569,776 – 569,870
Length 94
Sequences 4
Columns 94
Reading direction forward
Mean pairwise identity 88.95
Mean single sequence MFE -28.33
Consensus MFE -22.35
Energy contribution -23.04
Covariance contribution 0.69
Combinations/Pair 1.10
Mean z-score -2.22
Structure conservation index 0.79
SVM decision value 1.10
SVM RNA-class probability 0.914422
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 569776 94 + 22224390
CUGCAAAUUGAUGGCGAUGGGCCAUUGGCUGUAUAUGUAUGUAUGCUUGUGUGUGCCUAGUUGCCUCUCGCUCACUUCAAUUUGUUUGAUUAGC
..(((((((((.(((((.((((.(((((..(((((..((........))..)))))))))).)))).)))))....)))))))))......... ( -31.80)
>DroSec_CAF1 33551 90 + 1
CUGCGGAUUGAUGGCGAUGGGCCAUUGGUUGUAUAUG----UAUGCUUGUGUGUGCCUAGUUGCCUCUCGCUCACUUCAAUUUGUUUGAUUAGC
..(((((((((.(((((.((((.(((((..(((((..----((....))..)))))))))).)))).)))))....)))))))))......... ( -31.10)
>DroSim_CAF1 33076 90 + 1
CUGCGGCUUGAUGGCGAUGGGCCAUUGGUUGUAUAUG----UAUGCUUGUGUGUGCCUAGUUGCCUCUCGCUCACUUCAAUUUGUUUGAUUAGC
..((((.((((.(((((.((((.(((((..(((((..----((....))..)))))))))).)))).)))))....)))).))))......... ( -27.00)
>DroEre_CAF1 33969 85 + 1
CUGCGGAUUGAUGGAGAUGGGCUGU-GGCCUUAUAUG----U----GUGUGUGUGCCUAGUUCCCUCUCGCUCACUUCAAUUUGUUUGAUUAGC
..(((((((((.(((((.((((((.-(((..(((((.----.----..))))).)))))).))).)))).).....)))))))))......... ( -23.40)
>consensus
CUGCGGAUUGAUGGCGAUGGGCCAUUGGCUGUAUAUG____UAUGCUUGUGUGUGCCUAGUUGCCUCUCGCUCACUUCAAUUUGUUUGAUUAGC
..(((((((((.(((((.((((.(((((..((((((..............))))))))))).)))).)))))....)))))))))......... (-22.35 = -23.04 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:30 2006