| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,527,451 – 4,527,559 |
| Length | 108 |
| Max. P | 0.904564 |
| Location | 4,527,451 – 4,527,559 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 77.16 |
| Mean single sequence MFE | -34.32 |
| Consensus MFE | -19.27 |
| Energy contribution | -19.38 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.904564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4527451 108 + 22224390 UA---AUGGCCUCCACCUCCAUUUGCUCCAUUUGCUGUUCGCGCUG------CUGCUGCUGCUCCAGGGCUACCUGCUCCUCCUCGGCACGCUCCUGCUGCAGUAGAGCAUCCAGCU .(---((((.........)))))..........((((...((.(((------(((((((((....(((((.....)).)))...))))).((....)).))))))).))...)))). ( -33.10) >DroVir_CAF1 20322 105 + 1 AG---CUGGCCUCAACCAGCAGCAGUUGC---UGUUGCUGCUGCUG------UUGCUCCCGUUCCAGUGCCACCUGCUGUUCCUCAUCGCGCUCCUGCUGCAGCAGCGCAUUAAGCG .(---((((...((((.(((((((((...---....))))))))))------)))...)).....(((((...(((((((..(.............)..))))))).))))).))). ( -38.32) >DroSec_CAF1 800 108 + 1 UA---AUGGCCUCCACUUCCAUUUGUUCCAUUUGCUGCUCGCGCUG------CUGCUGCUGCUCCAGGGCUACCUGCUCCUCCUCGGCACGCUCCUGCUGCAGUAGAGCAUCCAGCU .(---((((.........)))))..........((((...((.(((------(((((((((....(((((.....)).)))...))))).((....)).))))))).))...)))). ( -33.10) >DroSim_CAF1 358 108 + 1 UA---AUGGCCUCCACCUCCAUUUGCUCCAUUUGCUGUUCGCGCUG------CUGCUGCCGCUCCAGGGCUACCUGCUCCUCCUCGGCACGCUCCUGCUGCAGUAGAGCAUCCAGCU .(---((((.........)))))..........((((...((.(((------(((((((((....(((((.....)).)))...))))).((....)).))))))).))...)))). ( -35.30) >DroEre_CAF1 1624 99 + 1 UU---AUGGCCUCCACCUCCAU---------UUGCUGCUCGCGCUG------CUGCUGCUGUUCCAGAGCCACCUGCUCCUCCUCGGCACGCUCCUGCUGCAGCAGAGCAUCCAGUU ..---((((.........))))---------..((((...((.(((------(((((((((.....((((.....)))).....))))).((....)).))))))).))...)))). ( -31.90) >DroPer_CAF1 1551 105 + 1 UGUAGGUGGCCUCCAUAU------GCUC------CUGCUCCCGCUGCAGUUGCUGCUCCCGCUCCAGAGCCACCUGCUCCUCCUCGGCCCGCUCCUGCUGCAGCAAAGCAUUCAAUU .(((((.(((........------))))------))))....((((((((.(..((..(((.....((((.....)))).....)))...))..).))))))))............. ( -34.20) >consensus UA___AUGGCCUCCACCUCCAUUUGCUCC__UUGCUGCUCGCGCUG______CUGCUGCCGCUCCAGGGCCACCUGCUCCUCCUCGGCACGCUCCUGCUGCAGCAGAGCAUCCAGCU ..........................................((((......(((((((.((....((((....((((.......)))).))))..)).)))))))......)))). (-19.27 = -19.38 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:55 2006