Locus 1577

Sequence ID X_DroMel_CAF1
Location 4,524,222 – 4,524,322
Length 100
Max. P 0.576632
window2588

overview

Window 8

Location 4,524,222 – 4,524,322
Length 100
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 85.01
Mean single sequence MFE -27.62
Consensus MFE -18.36
Energy contribution -18.43
Covariance contribution 0.06
Combinations/Pair 1.14
Mean z-score -1.63
Structure conservation index 0.66
SVM decision value 0.09
SVM RNA-class probability 0.576632
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4524222 100 - 22224390
AUUUCAAUUUUCCAUUGCUAGCUGUACAUUGUGUGCGAGUGGGAUGCAGCAUAACGGAGAGUCGAACGAUCUCACCC-----UCUCCCGCUCCCGCUCUCUCACU------
...............(((.....)))....(((.(.((((((((.((.(.....)((((((..((......))...)-----))))).)))))))))).).))).------ ( -28.40)
>DroSec_CAF1 19391 98 - 1
UUUUCAAUUUUCCAUCGCUAGCUGUACAUUGUGUGCGAGUGGGAUGCAGCAUAACGGAGAGUCGAACGAUCUCACCC-----UCUCCCGCAUCCACUCUCU--CU------
.......................((((.....))))((((((.((((.(.....)((((((..((......))...)-----))))).))))))))))...--..------ ( -25.80)
>DroSim_CAF1 11844 98 - 1
UUUUCAAUUUUCCAUCGCUAGCUGUACAUUGUGUGCGAGUGGGAUGCAGCAUUACGGAGAGUCGAACGAUCUCACCC-----UCUCCCGCAUCCGCUCUCU--CU------
.......................((((.....))))((((((.((((.(.....)((((((..((......))...)-----))))).))))))))))...--..------ ( -25.40)
>DroYak_CAF1 20374 108 - 1
UUUUACAUUUUCCAUUGCUAGCUGUACAUUGUGUGCGAGCGGGAUGGAGCAUGACGGAGAGUCAGACGAUCUCACCCCGCUCUCUUUCUCCUCCUCUC-CU--CUCCCCAU
....................(((((((.....)))).)))((((.((((...((.((((((..(((((.........)).)))..))))))))..)))-).--.))))... ( -30.90)
>consensus
UUUUCAAUUUUCCAUCGCUAGCUGUACAUUGUGUGCGAGUGGGAUGCAGCAUAACGGAGAGUCGAACGAUCUCACCC_____UCUCCCGCAUCCGCUCUCU__CU______
.......................((((.....))))(((((((.(((.(.....)((.(((((....)).))).))............))))))))))............. (-18.36 = -18.43 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:53 2006