Locus 1574

Sequence ID X_DroMel_CAF1
Location 4,490,951 – 4,491,045
Length 94
Max. P 0.625275
window2584

overview

Window 4

Location 4,490,951 – 4,491,045
Length 94
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 80.83
Mean single sequence MFE -39.70
Consensus MFE -26.50
Energy contribution -27.88
Covariance contribution 1.38
Combinations/Pair 1.17
Mean z-score -1.70
Structure conservation index 0.67
SVM decision value 0.19
SVM RNA-class probability 0.625275
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4490951 94 + 22224390
UGGUGAAAUGCGUU-UAUCGGAUGUGG---AAUAUUCGCAAUGUUUUC--------CCCCUAAAUCCGCCCGCCACGCCCCCCCACCUCCUACGGGGGGGCGAAAA
(((((....(((..-(...((..(..(---(((((.....))))))..--------).))...)..))).)))))(((((((((.........))))))))).... ( -34.00)
>DroSec_CAF1 9241 94 + 1
UGGGGAAAUGCGUU-CAUCUGAAGUGG---GAUAUUCGCAGAGUUUUC--------CGCCUCAAUCCGCCCGCCACGCCCCCCCACCUCCUACGGGGGGGCGAUGA
(((((....(((..-....(((.((((---((.((((...)))).)))--------))).)))...))))).)))(((((((((.........))))))))).... ( -38.70)
>DroSim_CAF1 7980 94 + 1
UGGGGAAAUGCGUU-CAUCUGCUGUGG---GAUAUUCGCAGAGUUUUC--------CGCCUGAAUCCGCCCGCCACGCCCCCCCACCUCCUACGGGGGGGCGAAGA
(((((....(((((-((......((((---((.((((...)))).)))--------))).))))..))))).)))(((((((((.........))))))))).... ( -36.60)
>DroEre_CAF1 15219 106 + 1
GGGCGAAGUGCGUUUCCUCUGAUGUGGCCUGAUGCUAGCGGCCUUUCCGGCCACGCCCCCUAAGUCCGGGCGCCACGCCCCCCCACCUCCUACGGGGGGGCGAAGA
.(((...................((((((.((.((.....))...)).))))))((((.........))))))).(((((((((.........))))))))).... ( -49.50)
>consensus
UGGGGAAAUGCGUU_CAUCUGAUGUGG___GAUAUUCGCAGAGUUUUC________CCCCUAAAUCCGCCCGCCACGCCCCCCCACCUCCUACGGGGGGGCGAAGA
.((((...((((...((((...........))))..)))).................((........)).)))).(((((((((.........))))))))).... (-26.50 = -27.88 +   1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:49 2006