Locus 1572

Sequence ID X_DroMel_CAF1
Location 4,482,861 – 4,482,954
Length 93
Max. P 0.885650
window2581

overview

Window 1

Location 4,482,861 – 4,482,954
Length 93
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 76.04
Mean single sequence MFE -21.37
Consensus MFE -13.42
Energy contribution -13.87
Covariance contribution 0.44
Combinations/Pair 1.21
Mean z-score -1.69
Structure conservation index 0.63
SVM decision value 0.94
SVM RNA-class probability 0.885650
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4482861 93 - 22224390
UCGUCUGGUGCAAACCAGACGCCUCUCCACUUGAGUGUCCACCGUCACCACUUCCUGCAUCAUCAGCUCCUGCGUAUUGGUCUCCAUGACCAA----
.((((((((....))))))))..........((.(((.(....).)))))...............((....))...((((((.....))))))---- ( -23.90)
>DroSec_CAF1 1152 93 - 1
UCGUCUGGUGCAAAUCACACGCCUCUCCAAUUGAGUGUCCACCGUCACCACCUCCUGCAUCAUCAGCUCCUGCGUAUUGGUCUCCGUGACCAA----
.....(((((((......((((.((.......)))))).....((....))....)))))))...((....))...((((((.....))))))---- ( -18.00)
>DroSim_CAF1 184 93 - 1
UCGUCUGGUGCAAACCAGACGCCUCUCCACUUGAGUGUCCACCGUCACCACCUCCUGCAUCAUCAGCUCCUGCGUAUUGGUCUCCGUGACCAA----
..(((((((....)))))))(((((.......))).)).....(((((.(((...((((...........))))....)))....)))))...---- ( -24.00)
>DroEre_CAF1 7450 93 - 1
UCUUCUGGUGCAUACCAGAAGCCUCUCCACUUUAGUGUCCUUCGCCUUCACCUCUUGCAUUACCAGCUCCUGGGUAUCGGUCUCCAUGACCAA----
.((((((((....))))))))......(((....)))............((((...((.......))....))))...((((.....))))..---- ( -22.20)
>DroYak_CAF1 5779 84 - 1
UCUUCUGGUACAAACCAGACGCCUCUCCACUUGAAUGUCC---------ACCUGUGUGUUCAUCACCACCUGGGUCUCCGUCUCCAUGACCAG----
....(((((.((....(((((....((((..((.(((..(---------((....)))..)))...))..))))....)))))...)))))))---- ( -19.30)
>DroAna_CAF1 10163 97 - 1
CCUUCUGGUGCAGAUCAGCCGUCGCUCCACCGAAGCCUCUCCAUUUCGCACCUCCUGCAUGACCACCUCCUGGGAAUCGGUCUCCACCACCACCACC
.....(((((.(((((....((((((.......)))...........(((.....)))..)))..((....)).....))))).)))))........ ( -20.80)
>consensus
UCGUCUGGUGCAAACCAGACGCCUCUCCACUUGAGUGUCCACCGUCACCACCUCCUGCAUCAUCAGCUCCUGCGUAUCGGUCUCCAUGACCAA____
.((((((((....))))))))............................................((....)).....((((.....))))...... (-13.42 = -13.87 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:46 2006