Locus 1570

Sequence ID X_DroMel_CAF1
Location 4,481,519 – 4,481,639
Length 120
Max. P 0.939614
window2579

overview

Window 9

Location 4,481,519 – 4,481,639
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.22
Mean single sequence MFE -30.03
Consensus MFE -29.12
Energy contribution -29.57
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -2.27
Structure conservation index 0.97
SVM decision value 1.30
SVM RNA-class probability 0.939614
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4481519 120 - 22224390
AUUCAAAUUGUUUUUCUAGAGCAGCGAGGAGCAAUUAUAAACAACGCAGUACGACACCAAAUGCCAUUUUGAAAAUCCACAGACAACCGGAACCGGUUGCAUCGUUAGCCAACACUGCGU
.....(((((((((((.........))))))))))).......(((((((((((...((((......))))..........(.((((((....))))))).))))........))))))) ( -30.30)
>DroSec_CAF1 82963 120 - 1
AUUCAAAUAGUUUUUCUAAACCAGCGAGGAGCAAUUAUAAACAACGCAGUACGACACCAAAUGCCAUUUUGAAAAUCCACAGGCAACUGGAACCGGUUGCAUCGUUAGCCAACACUGCGU
.........(((((((.........)))))))...........(((((((((((...((((......))))...........(((((((....))))))).))))........))))))) ( -28.10)
>DroSim_CAF1 76460 120 - 1
AUUCAAAUUGUUUUUCUAAACCAGCGAGGAGCAAUUAUAAACAACGCAGUACGACACCAAAUGCCAUUUUGAAAAUCCACAGGCAACUGGAACCGGUUGCAUCGUUAGCCAACACUGCGU
.....(((((((((((.........))))))))))).......(((((((((((...((((......))))...........(((((((....))))))).))))........))))))) ( -31.70)
>consensus
AUUCAAAUUGUUUUUCUAAACCAGCGAGGAGCAAUUAUAAACAACGCAGUACGACACCAAAUGCCAUUUUGAAAAUCCACAGGCAACUGGAACCGGUUGCAUCGUUAGCCAACACUGCGU
.....(((((((((((.........))))))))))).......(((((((((((...((((......))))...........(((((((....))))))).))))........))))))) (-29.12 = -29.57 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:45 2006