Locus 157

Sequence ID X_DroMel_CAF1
Location 567,312 – 567,405
Length 93
Max. P 0.786078
window250

overview

Window 0

Location 567,312 – 567,405
Length 93
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 76.49
Mean single sequence MFE -22.70
Consensus MFE -11.02
Energy contribution -13.09
Covariance contribution 2.06
Combinations/Pair 1.04
Mean z-score -2.37
Structure conservation index 0.49
SVM decision value 0.57
SVM RNA-class probability 0.786078
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 567312 93 - 22224390
UAUUGAAUAUCAACUACAUUCAGCCAGCACUUAU--AAAAUUUAAAAGAUAAUUAGUGAUGAACGCUGAUGAUUUUG-------------------------UGGCAUACGAUAUUCAGU
.((((((((((..(((((.(((..((((.(((.(--(.....)).)))....(((....)))..)))).)))...))-------------------------))).....)))))))))) ( -20.90)
>DroSec_CAF1 31401 92 - 1
UAUUGAAUAUCAACUACAUUCAGCCAGCACUGA---AAAAUGUAAAAGUAAAUCAGUGAUGAACGCUGCUGAUUUUA-------------------------UGGCACACGAUAUUCAGU
.((((((((((.......(((((......))))---)...(((......(((((((((........)))))))))..-------------------------..)))...)))))))))) ( -22.60)
>DroSim_CAF1 30884 92 - 1
UAUUGAAUAUCAACUACAUUCAGCCAGCACUGA---AAAAUGUAAAAGUAAAUCAGUAAUGAACGCUGCUGAUUUUA-------------------------UGGCACACGAUAUUCAGU
.((((((((((.......(((((......))))---)...(((......(((((((((........)))))))))..-------------------------..)))...)))))))))) ( -23.90)
>DroEre_CAF1 32166 120 - 1
UAUUCAACUUCAACUACAUUCUGCCAGCACUGAACAAAAAUGUAUAAGUAAAUCAGUGAUGAACGCUGAUGAUUAAAGAUGAAAAGUGGGUUUGCUUGUUUUCGGCACACCACUUUCAGC
.........(((.((....((...(((((((..(((....)))...)))...(((....)))..))))..))....)).)))(((((((...((((.......))))..))))))).... ( -23.40)
>consensus
UAUUGAAUAUCAACUACAUUCAGCCAGCACUGA___AAAAUGUAAAAGUAAAUCAGUGAUGAACGCUGAUGAUUUUA_________________________UGGCACACGAUAUUCAGU
.((((((((((........(((((.((((((...............)))...(((....)))..))))))))...............................(.....))))))))))) (-11.02 = -13.09 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:29 2006