Locus 1569

Sequence ID X_DroMel_CAF1
Location 4,481,172 – 4,481,277
Length 105
Max. P 0.526554
window2578

overview

Window 8

Location 4,481,172 – 4,481,277
Length 105
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 87.22
Mean single sequence MFE -28.98
Consensus MFE -22.35
Energy contribution -22.35
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 0.77
SVM decision value -0.01
SVM RNA-class probability 0.526554
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4481172 105 - 22224390
UCGCCACCGAUAGGCGAUAACUUUCGAUAUCAGGUGGCUCAAUUUGUUUUCGAAUGAUUUUAGCGUCACAUC--------------AAACUAGUUUCUA-ACGCUGCUUCCAUGUGGCGA
..((((((((((..(((......))).)))).))))))(((.((((....)))))))......((((((((.--------------.((.((((.....-..)))).))..)))))))). ( -31.90)
>DroSec_CAF1 82576 120 - 1
UCGCCACCGAUAGGCAAAAAUUUUCGAUAUCAGUUUGUUUAAUUUGUUUUCGAAUGAUUUUAGCGUCACAUCAAAAUAGUCACGUCAAACUAGUCUCUAAACGCUGCUUCCAUGUGGCGA
(((((((....((((.(((((((((((...(((..........)))...))))).))))))(((((..........((((........))))........)))))))))....))))))) ( -28.27)
>DroSim_CAF1 76088 120 - 1
UCGCCACCGAUAGGCAAUAAUUUUCGAUAUCAGUUGGUUUAAUUUGUUUUCGAAUGAUUUUAGCGUCACAUCAAAAUAGUCACGUCAAACUAGUCUCUAAACGCUGCUUCCAUGUGGCGA
((((((((((.((((((......(((((....)))))......))))))))).(((....((((((..........((((........))))........))))))....)))))))))) ( -26.77)
>consensus
UCGCCACCGAUAGGCAAUAAUUUUCGAUAUCAGUUGGUUUAAUUUGUUUUCGAAUGAUUUUAGCGUCACAUCAAAAUAGUCACGUCAAACUAGUCUCUAAACGCUGCUUCCAUGUGGCGA
(((((((....((((.......(((((...(((..........)))...))))).......(((((..................................)))))))))....))))))) (-22.35 = -22.35 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:44 2006