Locus 1568

Sequence ID X_DroMel_CAF1
Location 4,480,532 – 4,480,652
Length 120
Max. P 0.540000
window2577

overview

Window 7

Location 4,480,532 – 4,480,652
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -26.67
Consensus MFE -26.40
Energy contribution -26.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.39
Structure conservation index 0.99
SVM decision value 0.01
SVM RNA-class probability 0.540000
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4480532 120 - 22224390
AACCAUGUCCCAAUCCGCGGAGGACAUACGCACACCUACCAAGUCGCCCCAGAUGCAAAACAAAAAAACGCAGACACCAGAGUCUGUCCUUAAGUCACACAAACGCCUGGAGUGGGAUCC
......((((((.((((((((((((.................(((......))).................((((......))))))))))..(.....)...)))..))).)))))).. ( -28.10)
>DroSec_CAF1 81969 120 - 1
AACAAUGUCCCAAUCCGCGGAAGACAUACGCACACCUACCAAGUCGCCCCAGAUGCAAAACAAAAAAACGCAGACACCAGAGUCUGUCCUUAAGUCACACAAACGCCUGGAGUGGGAUCC
......((((((.((((((...(((.................(((......)))...............((((((......))))))......))).......)))..))).)))))).. ( -26.20)
>DroSim_CAF1 75481 120 - 1
AACAAUGUCCCAAUCCGCGGAAGACAUACGCACACCUACCAAGUCGCCCCAGAUGCAAAACAAAAAAACGCAGACCCCAGAGUCUGUCCUUAAGUCACACAAACGCCUGGAGUGGGAUCC
......((((((.((((((...(((.................(((......)))...............((((((......))))))......))).......)))..))).)))))).. ( -25.70)
>consensus
AACAAUGUCCCAAUCCGCGGAAGACAUACGCACACCUACCAAGUCGCCCCAGAUGCAAAACAAAAAAACGCAGACACCAGAGUCUGUCCUUAAGUCACACAAACGCCUGGAGUGGGAUCC
......((((((.((((((...(((.................(((......)))...............((((((......))))))......))).......)))..))).)))))).. (-26.40 = -26.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:43 2006