| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,478,169 – 4,478,269 |
| Length | 100 |
| Max. P | 0.521168 |
| Location | 4,478,169 – 4,478,269 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 65.53 |
| Mean single sequence MFE | -37.27 |
| Consensus MFE | -15.80 |
| Energy contribution | -16.20 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.42 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521168 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4478169 100 + 22224390 UGGUAAAGUUUCUGUUGCUGAAGCAAUACAAA--CUGUUGCU---GCUGCUGGUUCUGAUAAUGCUCGCGGAACUGACGCUGCCUUUGCUGGACAAAGGAGCAGA------ .((((((((((.((((((....)))))).)))--)).)))))---.((((((((((((..........))))))).......((((((.....))))))))))).------ ( -32.70) >DroVir_CAF1 15206 99 + 1 GCGAAACGCACCAAGGGCAGCAGCAAUGCCGGCGCUGGAGCUGGAGCUGCUGG---UGCCAAUGCUGGCGGAGGUGCCGCUGC---------ACGCGGCAGCAGCAAAAAG ((....(((..((..((((.(((((...(((((......)))))...))))).---))))..))...)))..(.((((((...---------..)))))).).))...... ( -48.10) >DroSec_CAF1 79498 100 + 1 UGGUAAAGUUUCUGUUGCUGGAGCAAUACAAA--CUGUUGCU---GCUGCUGGUUCUGAUAAUGCUCGCGGAACUGACGCUGUCUUUGCUGGACAAAAGAGCAGA------ .((((((((((.((((((....)))))).)))--)).)))))---.((((((((((((..........))))))).....(((((.....)))))....))))).------ ( -31.00) >consensus UGGUAAAGUUUCUGUUGCUGAAGCAAUACAAA__CUGUUGCU___GCUGCUGGUUCUGAUAAUGCUCGCGGAACUGACGCUGCCUUUGCUGGACAAAGGAGCAGA______ ..........((.((.((...(((((((.......)))))))...)).)).)).........((((((((.......)))((.((.....)).))...)))))........ (-15.80 = -16.20 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:42 2006