| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,476,665 – 4,476,764 |
| Length | 99 |
| Max. P | 0.997627 |
| Location | 4,476,665 – 4,476,764 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 70.21 |
| Mean single sequence MFE | -21.53 |
| Consensus MFE | -14.31 |
| Energy contribution | -13.53 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.66 |
| SVM decision value | 2.90 |
| SVM RNA-class probability | 0.997627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4476665 99 - 22224390 CACGUAUGGUUUAGUCCAUACGUAAUG------------UUUAAAUUUAAUGUAGACGGCCAGUUAACUCCAAACAUAGAAAACUAUGUUGAUU---------UAGCAUUUGACUAAAUU .((((((((......))))))))((((------------((.(((((....((.(((.....))).))....(((((((....)))))))))))---------))))))).......... ( -22.60) >DroSec_CAF1 77970 96 - 1 CACGUAUGGUUUAGUCUAUACGUAAUG------------UUAAAAUUUAAUAUAAGCGGCCGGUUAACUCCAAACAUAGAUAACUAUGUUGAUC---------U---AUUUGACUAAAUU .((((((((......))))))))...(------------(((((.................((......)).(((((((....)))))))....---------.---.))))))...... ( -19.50) >DroYak_CAF1 75257 119 - 1 CAGGUUUGGCUUAGUUUAUAGGAAAUAAUAAUAAUAAUUAUCAAAUUUAGGGUAGGCAGUCAGCCAACUACAAACAUAGA-AACUAUGUUGAACCUAUACAACCAGAAUUUGACUAAAUU .(((((..((.((((((....(.....(((((....))))).........(((.(((.....))).))).....)....)-))))).))..)))))........................ ( -22.50) >consensus CACGUAUGGUUUAGUCUAUACGUAAUG____________UUAAAAUUUAAUGUAGGCGGCCAGUUAACUCCAAACAUAGA_AACUAUGUUGAUC_________UAG_AUUUGACUAAAUU .......(((((((((......................................(((.....))).......(((((((....))))))).....................))))))))) (-14.31 = -13.53 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:41 2006